View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1993_low_5 (Length: 308)
Name: NF1993_low_5
Description: NF1993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1993_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 5 - 291
Target Start/End: Original strand, 35773016 - 35773302
Alignment:
| Q |
5 |
gaccaacaatgagcaagtgatgttggacagagttgatagtagtcatgtgaagatcgacagtctgcacctcgaatcagactcttgggatccgatttccgaa |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
35773016 |
gaccaacaatgagcaagtgatgttggacagagttgatagtagtcatgtgaagatcgacagtccgcaccttgaatcagactcttgggatccgatttccgaa |
35773115 |
T |
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| Q |
105 |
ctagaaagtttgttacatgatagttataagttgtctcctatgtgcactgactcaacaactgtttcagtgctccaagcttcaaatgttgcagctatttttg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35773116 |
ctagaaagtttgttacatgatagttataagttgtctcctatgtgcactgactcaacaactgtttcagtgctccaagcttcaaatgttgcagctatttttg |
35773215 |
T |
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| Q |
205 |
aaaatttagaaacccttttggagacaccacttgaaatgctctcttcagacgatgaagtgaagcaaaagttccatcaaattttggaac |
291 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35773216 |
aaaatttagaaacccttttggagacaccacttgaaattctctcttcagacgatgaagtgaagcaaaagttccatcaaattttggaac |
35773302 |
T |
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