View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1993_low_7 (Length: 300)
Name: NF1993_low_7
Description: NF1993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1993_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 43957712 - 43957599
Alignment:
| Q |
114 |
ctctatacattcatgtgctatcctcatatttaaaacgtgctctttcatttcagcgtctaaagtttggcagaaccctaatcagcttcgatgcccccaaatt |
213 |
Q |
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| T |
43957712 |
ctctatacattcatgtgctatcctcatatttaaaacgtgctctttcatttcagcgtctaaagtttggtagaaccctaatcagcttcgatgcccccaaatt |
43957613 |
T |
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| Q |
214 |
gtgttgtcgaaaag |
227 |
Q |
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| T |
43957612 |
gtgttgtcgaaaag |
43957599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 43957831 - 43957737
Alignment:
| Q |
10 |
aatattaagtgggagtatcttgggaagttcaggcgagcaatttcggttgggaaaagagtaattttccgtatgtaatacgacgtcg-tagcgaacg |
103 |
Q |
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| T |
43957831 |
aatattaagtgggagtatttagggaagttcaggcgagcaatttcggttgggaaaagagtaattttccgtatgtaatacgacgtcgttagcgaacg |
43957737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 43957542 - 43957475
Alignment:
| Q |
233 |
ttggtgttttaattgaagaatgaattgaatttggttgagttgatgatgaaagtataattggcatgagc |
300 |
Q |
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| T |
43957542 |
ttggtgttttaattgaagaatgaattgaatttggttgagttgatgatgaaagtataattggcatgagc |
43957475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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