View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1993_low_8 (Length: 235)
Name: NF1993_low_8
Description: NF1993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1993_low_8 |
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| [»] chr2 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 3427055 - 3426822
Alignment:
| Q |
2 |
atgatgaaaatgaaagaatctccacaaaccttactataatgtatagacaacttgtctcaaatggaaaaacttcaactctattcctcggaagctcttaccg |
101 |
Q |
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| T |
3427055 |
atgatgaaaatgaaagaatctccacaaaccttactataatgtatagacaacttgtctcaaatggaaaaacttcaactctattcctcggaagctcttaccg |
3426956 |
T |
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| Q |
102 |
tgccggtgatcaacccgatccaggtgctggatccatagagaatgttccacatggaccagttcatagatggagtggtgataatacacaacctaactttgaa |
201 |
Q |
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| T |
3426955 |
tgccggtgatcaacccgatccaggtgctggatccatagagaatgttccacatggaccagttcatagatggagtggtgataatacgcaacctaactttgaa |
3426856 |
T |
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| Q |
202 |
aacatgggaactttctatgcagctgctagagatc |
235 |
Q |
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| T |
3426855 |
aacatgggaactttctatgcagctgctagagatc |
3426822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 3 - 235
Target Start/End: Complemental strand, 3433236 - 3433004
Alignment:
| Q |
3 |
tgatgaaaatgaaagaatctccacaaaccttactataatgtatagacaacttgtctcaaatggaaaaacttcaactctattcctcggaagctcttaccgt |
102 |
Q |
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| T |
3433236 |
tgatgaaaatgaaaggatctccacaaaccttactataatgtatagacaggttgtgtctggtggaaaaacctcaacacttttcctcggaaacccttaccgt |
3433137 |
T |
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| Q |
103 |
gccggtgatcaacccgatccaggtgctggatccatagagaatgttccacatggaccagttcatagatggagtggtgataatacacaacctaactttgaaa |
202 |
Q |
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| T |
3433136 |
gctggagatgcaccggatcccggtgctggatccgtagagattgttccacataatatagttcatctatggagtggtgatgatacgcaacctaactttgaag |
3433037 |
T |
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| Q |
203 |
acatgggaactttctatgcagctgctagagatc |
235 |
Q |
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| T |
3433036 |
acatgggagatttctattcagctgcaagagatc |
3433004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 11912451 - 11912553
Alignment:
| Q |
133 |
tccatagagaatgttccacatggaccagttcatagatggagtggtgataatacacaacctaactttgaaaacatgggaactttctatgcagctgctagag |
232 |
Q |
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| T |
11912451 |
tccatagagaatgttccacataatacaattcatacatggagtggtgataataggcaacctaaccatgaaaacatgggaaatttctattcagcagcaagag |
11912550 |
T |
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| Q |
233 |
atc |
235 |
Q |
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| T |
11912551 |
atc |
11912553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 11897350 - 11897460
Alignment:
| Q |
125 |
gtgctggatccatagagaatgttccacatggaccagttcatagatggagtggtgataatacacaacctaactttgaaaacatgggaactttctatgcagc |
224 |
Q |
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| T |
11897350 |
gtgctggatccgtagagattgttcctcataatacagttcataattggagtggtgatactaggcaacctaaccatgaaaacatgggaactttctattcagc |
11897449 |
T |
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| Q |
225 |
tgctagagatc |
235 |
Q |
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| T |
11897450 |
agcaagagatc |
11897460 |
T |
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