View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19940_high_5 (Length: 250)
Name: NF19940_high_5
Description: NF19940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19940_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 17722845 - 17722714
Alignment:
| Q |
1 |
caatgttataggttttgtggagaaactttgcttcttaaaactctcaattacgtgaaaa--ccaatattgttatataagataaactggaaaagtctgcatt |
98 |
Q |
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| T |
17722845 |
caatgttataggttttgtggaggaactttgcttcttacaactcttaattgtgtgaaaaggccaataatgttatataagataaactggaaaagtctgcatt |
17722746 |
T |
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| Q |
99 |
cacatattgataataaataaaagcttgaaaag |
130 |
Q |
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| T |
17722745 |
cacatatttataattaatagatccttgaaaag |
17722714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 19024074 - 19023943
Alignment:
| Q |
1 |
caatgttataggttttgtggagaaactttgcttcttaaaactctcaattacgtgaaaa--ccaatattgttatataagataaactggaaaagtctgcatt |
98 |
Q |
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| T |
19024074 |
caatgttataggttttgtggaggaactttgcttcttacaactcttaattgtgtgaaaaggccaataatgttatataagataaactggaaaagtctgcatt |
19023975 |
T |
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| Q |
99 |
cacatattgataataaataaaagcttgaaaag |
130 |
Q |
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| T |
19023974 |
cacatatttataattaatagatccttgaaaag |
19023943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 18114281 - 18114371
Alignment:
| Q |
150 |
gtatcaaatatcaatggtgataatatttagtataaaaatcttcatattacacctcagatgccacgaaagtatcatagtcacataattttctt |
241 |
Q |
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| T |
18114281 |
gtatcaaatatcaatggtgataatatttagtattaaaatcttcatattacatctc-tatgccacgaaagtatcatagtcacataattctctt |
18114371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 18114123 - 18114219
Alignment:
| Q |
23 |
aaactttgcttcttaaaactctcaattacgtgaaaa--ccaatattgttatataagataaactggaaaagtctgcattcacatattgataataaata |
117 |
Q |
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| T |
18114123 |
aaactttgcttcttacaactcttaattgtgtgaaaaggccaatattgttatataagataaaatggagaagtctgcattcacatattgataattaata |
18114219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 17722636 - 17722558
Alignment:
| Q |
163 |
atggtgataatatttagtataaaaatcttcatattacacctcagatgccacgaaagtatcatagtcacataattttctt |
241 |
Q |
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| T |
17722636 |
atggtgataatatttagtataaaaatcttcatattacacatcacatgccacgaaattatcatagttgcatgattttctt |
17722558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 19023865 - 19023787
Alignment:
| Q |
163 |
atggtgataatatttagtataaaaatcttcatattacacctcagatgccacgaaagtatcatagtcacataattttctt |
241 |
Q |
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| T |
19023865 |
atggtgataatatttagtataaaaatcttcatattacacatcacatgccacgaaattatcatagttgcatgattttctt |
19023787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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