View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19940_low_1 (Length: 536)
Name: NF19940_low_1
Description: NF19940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19940_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 73 - 521
Target Start/End: Complemental strand, 39236509 - 39236061
Alignment:
| Q |
73 |
gagatgaaataacgatgaacgaaaatattagtacccgtgataacaatgtaaatagacaaagagtattagatgttgaaacagaagaagatagtgaaaagca |
172 |
Q |
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| T |
39236509 |
gagatgaaataacgatgaacgaaaatattagtacccgtgataacaatgtaaatagacaaagagtattagatgttgaaacagaagaagatagtgaaaagca |
39236410 |
T |
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| Q |
173 |
aatggatgagaagtttttgcattggttcacaatgagccatgtgaatgatgattcaattgcatatattgaaaaggttgtaaacaatggcgaggaaactgtc |
272 |
Q |
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| T |
39236409 |
aatggatgagaagtttttgcattggttcacaatgagccatgtgaatgatgattcaattgcatatattgaaaaggttgtaaacaatggcgaggaaactgtc |
39236310 |
T |
|
| Q |
273 |
gcggcgataaggtctatgggtgatgtatttggcctttttatagttgggagaggacaaggagttatatcgccactgacggcagggctaactgactggagtg |
372 |
Q |
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| T |
39236309 |
gcagcgataaggtctatgggtgatgtatttggcctttttatagttgggagaggacaaggagttatatcaccgctgacggcagggctaactgactggagtg |
39236210 |
T |
|
| Q |
373 |
agtgtcctgaattaggagcaattggtgatttgttagcatcatctgattttgcaacaattgcttcagtgttggtagttcaacaatatgttggagctggtac |
472 |
Q |
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| T |
39236209 |
agtgtcctgaattaggagcaattggtgatttgttagcatcatctgattttgcaacaattgcttcagtgttggtagttcaacaatatgttggagctggtac |
39236110 |
T |
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| Q |
473 |
tgaagatggattgggaacaccagtgttaacaaatgaagattatgttagt |
521 |
Q |
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| T |
39236109 |
tgaagatggattgggaacaccagtgttaacaaatgaagattatgttagt |
39236061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 306 - 463
Target Start/End: Complemental strand, 44054413 - 44054256
Alignment:
| Q |
306 |
ctttttatagttgggagaggacaaggagttatatcgccactgacggcagggctaactgactggagtgagtgtcctgaattaggagcaattggtgatttgt |
405 |
Q |
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|||||||||||||| ||||| | |||| | ||||| ||| |||| ||||| || ||||| |||||||||||||||||| | || ||||||||||| || | |
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| T |
44054413 |
ctttttatagttggaagaggtcgaggaatgatatcaccattgacagcaggactcactgattggagtgagtgtcctgaaatgggtgcaattggtgacttat |
44054314 |
T |
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| Q |
406 |
tagcatcatctgattttgcaacaattgcttcagtgttggtagttcaacaatatgttgg |
463 |
Q |
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| T |
44054313 |
tagcagcttcagattttgcagcaagtgcttcagttttggtagttcaacaacatgttgg |
44054256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 440
Target Start/End: Original strand, 2813263 - 2813391
Alignment:
| Q |
312 |
atagttgggagaggacaaggagttatatcgccactgacggcagggctaactgactggagtgagtgtcctgaattaggagcaattggtgatttgttagcat |
411 |
Q |
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|||||||||||||| || |||| | |||||||| |||| ||| | || || |||||||| ||||| || |||||||| ||||| ||||||||||| | |
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| T |
2813263 |
atagttgggagaggtcagggagattcttcgccactaacggaaggtttgacggattggagtgaatgtcccgagttaggagccattggagatttgttagctt |
2813362 |
T |
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| Q |
412 |
catctgattttgcaacaattgcttcagtg |
440 |
Q |
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| || || |||| ||||| |||||||||| |
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| T |
2813363 |
cttcagactttgaaacaagtgcttcagtg |
2813391 |
T |
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