View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19940_low_2 (Length: 510)
Name: NF19940_low_2
Description: NF19940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19940_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 23421080 - 23420582
Alignment:
| Q |
1 |
cagttcagtgaccaaatcattgcagagaattatggatgctacttgtaacattctgttgaaaacaaattatcaccaatattatagaaaactggagataatg |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
23421080 |
cagttcagtgaccaaattattgcagagaattatggatgctacttgtaacattctgttgaaaacaaattatcacaaatattatagaaaactggtgataatg |
23420981 |
T |
|
| Q |
101 |
ctctttgttgtagaatctcaagaagatagtatgatagagaaaatttgttattggttgaggttgtagcaaaatcaaatgattctagtttgtggaaagttat |
200 |
Q |
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|||| ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| || |
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| T |
23420980 |
ctctatgttgtagaatctaaagaagaaagtatgatagtgaaaatttgttattggttgaggttgtagcaaaaac-aatgattctagtttgtggaaagataa |
23420882 |
T |
|
| Q |
201 |
ggtgaaattataactaatgttagtagcttggcgccttggatttt-------ttgaaatggtgaaccagttcaagcttagaagtattgttggttggattaa |
293 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| | ||||||||||| |||||||||||||||| ||||| |
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| T |
23420881 |
agtgaaattataactaatgttagtagcttggcgcattggattatttgaaaattgaaatggtggatcagttcaagctgagaagtattgttggttagattag |
23420782 |
T |
|
| Q |
294 |
ggattaaaacagatcaaccttgatattaatatccctattggcatgcaatatgttaaagttgaagagcttgtcaatgagcacgaggagtggagaatgaata |
393 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
23420781 |
agattaaaagtgatcaaccttgatattaatatcccaattggcatgtaatatgttaaagttgaagagcttgtcagtgagcacggggagtggagaatgaata |
23420682 |
T |
|
| Q |
394 |
atttgcaagggtagctccctgttgaaattctggacagatatagagccatcccgccgccaaatattgattatggtaacgatgtttgtacttagggcctggt |
493 |
Q |
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| T |
23420681 |
atttgcaagggtagctccctgttgaaattctggacagatttagagccatcccaccaccaaatattgattatggtagcgatgtttgtgcgtagggcctggt |
23420582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 23878254 - 23878568
Alignment:
| Q |
1 |
cagttcagtgaccaaatcattgcagagaattatggatgctacttgtaacattctgttgaaaacaaattatcaccaatattatagaaaactggagataatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| | |
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| T |
23878254 |
cagttcagtgaccaaatcattgcagagaattatggattttacttgtaacattcttttgaaaacaaattatcaccaatattatagaaatctggtgataacg |
23878353 |
T |
|
| Q |
101 |
ctctttgttgtagaatctcaagaagatagtatgatagagaaaatttgttattggttgaggttgtagcaaaatcaaatgattctagtttgtggaaagttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23878354 |
ctctttgttgtagaatctcaagaagatagtatgatagagaaaatttgttattggttgaggttgtagcaaaatcaaatgattctagtttgtggaaagttat |
23878453 |
T |
|
| Q |
201 |
ggtgaaattataactaatgttagtagcttggcgccttggattttttgaaatggtgaaccagttcaagcttagaagtattgttggttggattaaggattaa |
300 |
Q |
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| T |
23878454 |
ggtgaaattataactaatgtcagtagcttggcgcattggattttttgaaatggcgaaccagttcaagcttagaagtattgttggttggattaaggattaa |
23878553 |
T |
|
| Q |
301 |
aacagatcaaccttg |
315 |
Q |
| |
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||||||||||||||| |
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| T |
23878554 |
aacagatcaaccttg |
23878568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 310 - 494
Target Start/End: Original strand, 23882546 - 23882730
Alignment:
| Q |
310 |
accttgatattaatatccctattggcatgcaatatgttaaagttgaagagcttgtcaatgagcacgaggagtggagaatgaataatttgcaagggtagct |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| || || |
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| T |
23882546 |
accttgatattaatatccctattggcatgcaatatgttaaagttgaagagcttgtcaatgagcatgaggagtggagaatgaatcatttgcaaggataact |
23882645 |
T |
|
| Q |
410 |
ccctgttgaaattctggacagatatagagccatcccgccgccaaatattgattatggtaacgatgtttgtacttagggcctggtg |
494 |
Q |
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| T |
23882646 |
ccctgttgaaattctggacagatatagagccatcccgccgccaaatattgattatggtaactatgtttgtgcgtagggcctggtg |
23882730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 50 - 211
Target Start/End: Original strand, 23876000 - 23876162
Alignment:
| Q |
50 |
attctgttgaaaacaaattatcaccaatattatagaaaactggagataatgctcttt-gttgtagaatctcaagaagatagtatgatagagaaaatttgt |
148 |
Q |
| |
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||||||| ||||| ||||| ||| |||||||||||||||||| ||||||||||||| |||||||||| |||||| || |||||| |||||||||||||| |
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| T |
23876000 |
attctgtagaaaataaattggcacaaatattatagaaaactggtgataatgctcttttgttgtagaatttcaagaggaaagtatgctagagaaaatttgt |
23876099 |
T |
|
| Q |
149 |
tattggttgaggttgtagcaaaatcaaatgattctagtttgtggaaagttatggtgaaattat |
211 |
Q |
| |
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|||||| || | | ||||||||||||| ||||||| ||||||||| |||||||||||||| |
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| T |
23876100 |
tattggatgggtgtttagcaaaatcaaaagattctaatttgtggaataatatggtgaaattat |
23876162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 23423025 - 23422961
Alignment:
| Q |
44 |
tgtaacattctgttgaaaacaaattatcaccaatattatagaaaactggagataatgctctttgt |
108 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| ||| |||||||| ||||||||||||||| |
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| T |
23423025 |
tgtaacattctgttgaaaacaaattgtcaccaatatgataaaaaactggtgataatgctctttgt |
23422961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 326
Target Start/End: Original strand, 23876176 - 23876362
Alignment:
| Q |
144 |
tttgttattggttgaggttgtagcaaaatcaaatgattctagtttgtggaaagttatggtgaaattataac---taatgtt-agtagcttggcgccttgg |
239 |
Q |
| |
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||||||||||| |||| | || |||||||||| ||||||| |||||||||| |||||||||||||| | |||| || ||||||||| | | | || |
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| T |
23876176 |
tttgttattggatgagtgtttaacaaaatcaaaagattctaatttgtggaaaaatatggtgaaattatggcctataatcttaagtagcttgacacatagg |
23876275 |
T |
|
| Q |
240 |
attttttgaaatggtgaaccagttcaagcttagaagtattgttggttggattaaggattaaaacagatcaaccttgatattaatatc |
326 |
Q |
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||| ||||||| |||||||| ||||||||| || |||||||||| ||| | ||||||||| ||| | ||||||||||||||| |
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| T |
23876276 |
attatttgaaacagtgaaccatttcaagcttgagagcattgttggtttgatgagggattaaaagtgattgatcttgatattaatatc |
23876362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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