View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19940_low_3 (Length: 464)
Name: NF19940_low_3
Description: NF19940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19940_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 380025 - 380396
Alignment:
| Q |
1 |
attgctttgagatttgaccattacatctgacgagctacccagaggagtattgctagtcggtcctccaggaactggcaagacattacttgcgcgtgcagta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
380025 |
attgctttgagatttgaccattacatctgacgagctacccagaggagtattgctagtcagtcctccaggaactggcaagacattacttgcgcatgcagta |
380124 |
T |
|
| Q |
101 |
gcggggggagcaggtgtacccttttt-cacagt--ctgctaacgagtttgtagaattgtttgttggaagaggtgcagctagaatcagagacctgttcagt |
197 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
380125 |
gcggggggagcaggtgtacccttttttcacagtatctgctaacgagtttgtagaattgtttgttggaagaggtgcagctagaatcagagacctgttcagt |
380224 |
T |
|
| Q |
198 |
acagcaaggaaatttcaccgtcaatcatattcattgatgaacttgatgcggttggcagcaagcgtggaagaagcttcaatgatgaacgtgagcacaaacg |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
380225 |
acagcaaggaaatttcaccgtcaatcatattcattgatgaacttgatgcggttggcagcaagcgtggaagaagcttcaatgatgaacgtgatcacaaatg |
380324 |
T |
|
| Q |
298 |
ctaaaagaggcaagcttggtcatcatttttgtatttctttcctagcaacaaatgatttaacttatggttatc |
369 |
Q |
| |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
380325 |
ctaaaagaggtaaggttggtcatcatttttgtatttctttcctagcaacaaatgatttaactcatggttatc |
380396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 33 - 448
Target Start/End: Original strand, 6300039 - 6300454
Alignment:
| Q |
33 |
agctacccagaggagtattgctagtcggtcctccaggaactggcaagacattacttgcgcgtgcagtagcggggggagcaggtgtaccctttttcacag- |
131 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
6300039 |
agctacccagaggagtgttgctagtcggtcctccaggaactggcaagacattacttgcacgtgcagtagcgggggaagcaggtgtaccctttttcacagt |
6300138 |
T |
|
| Q |
132 |
-tctgctaacgagtttgtagaattgtttgttggaagaggtgcagctagaatcagagacctgttcagtacagcaaggaaattt-caccgtcaatcatattc |
229 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| |
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| T |
6300139 |
atctgctagtgagtttgtagaaatgtttgttggaagaggtgcagctagaatcagagacctgttcagtagagcaaggaaatttgcaccatcaatcatattc |
6300238 |
T |
|
| Q |
230 |
attgatgaacttgatgcggttggcagcaagcgtggaagaagcttcaatgatgaacgtgagcacaaacgctaaaagaggcaagcttggtcatcatttttgt |
329 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| || ||||||||||| ||||||| || ||||||| |||||| |
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| T |
6300239 |
attgatgaacttgatgcggttggtggcaagcgtggaagaggcttcaatgaggaacggga--ccaaacgctaaatcaggcaagtttagtcatca-ttttgt |
6300335 |
T |
|
| Q |
330 |
atttctttcctagcaacaaatgatttaacttatggttatcaatatcttaagatgcatgtgagacatatcttgattccatactaaactgaattaaatcaat |
429 |
Q |
| |
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|||||||| |||||||||| | ||| |||| || |||||||||||| || ||||||| ||| | |||||| |||| |||||| |||||| | |||| || |
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| T |
6300336 |
atttcttttctagcaacaatttattgaactcatagttatcaatatcatataatgcatgcgagtcgtatctttattcgatactatactgaactcaatcgat |
6300435 |
T |
|
| Q |
430 |
acaaatctctggtgtgtat |
448 |
Q |
| |
|
| |||||||||||||||| |
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| T |
6300436 |
atgaatctctggtgtgtat |
6300454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 33 - 448
Target Start/End: Original strand, 6306849 - 6307264
Alignment:
| Q |
33 |
agctacccagaggagtattgctagtcggtcctccaggaactggcaagacattacttgcgcgtgcagtagcggggggagcaggtgtaccctttttcacag- |
131 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
6306849 |
agctacccagaggagtgttgctagtcggtcctccaggaactggcaagacattacttgcacgtgcagtagcgggggaagcaggtgtaccctttttcacagt |
6306948 |
T |
|
| Q |
132 |
-tctgctaacgagtttgtagaattgtttgttggaagaggtgcagctagaatcagagacctgttcagtacagcaaggaaattt-caccgtcaatcatattc |
229 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| |
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| T |
6306949 |
atctgctagtgagtttgtagaaatgtttgttggaagaggtgcagctagaatcagagacctgttcagtagagcaaggaaatttgcaccatcaatcatattc |
6307048 |
T |
|
| Q |
230 |
attgatgaacttgatgcggttggcagcaagcgtggaagaagcttcaatgatgaacgtgagcacaaacgctaaaagaggcaagcttggtcatcatttttgt |
329 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| || ||||||||||| ||||||| || ||||||| |||||| |
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| T |
6307049 |
attgatgaacttgatgcggttggtggcaagcgtggaagaggcttcaatgaggaacggga--ccaaacgctaaatcaggcaagtttagtcatca-ttttgt |
6307145 |
T |
|
| Q |
330 |
atttctttcctagcaacaaatgatttaacttatggttatcaatatcttaagatgcatgtgagacatatcttgattccatactaaactgaattaaatcaat |
429 |
Q |
| |
|
|||||||| |||||||||| | ||| |||| || |||||||||||| || ||||||| ||| | |||||| |||| |||||| |||||| | |||| || |
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| T |
6307146 |
atttcttttctagcaacaatttattgaactcatagttatcaatatcatataatgcatgcgagtcgtatctttattcgatactatactgaactcaatcgat |
6307245 |
T |
|
| Q |
430 |
acaaatctctggtgtgtat |
448 |
Q |
| |
|
| |||||||||||||||| |
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|
| T |
6307246 |
atgaatctctggtgtgtat |
6307264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 356 - 451
Target Start/End: Original strand, 382140 - 382235
Alignment:
| Q |
356 |
aacttatggttatcaatatcttaagatgcatgtgagacatatcttgattccatactaaactgaattaaatcaatacaaatctctggtgtgtatatt |
451 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
382140 |
aactcatggttatcaatatcttaagatgcatgtgagacatatcttgattcgatactaaactgaattaaatcaatacaaatctctggtgtgtatatt |
382235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 448
Target Start/End: Complemental strand, 30864065 - 30863989
Alignment:
| Q |
372 |
tatcttaagatgcatgtgagacatatcttgattccatactaaactgaattaaatcaatacaaatctctggtgtgtat |
448 |
Q |
| |
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||||||| ||| |||||||| | ||||| ||||| |||||||| |||| | |||| |||||||||||| |||||||| |
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| T |
30864065 |
tatcttacgatacatgtgagtcgtatctcgattcaatactaaaatgaactcaatcgatacaaatctctagtgtgtat |
30863989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 438
Target Start/End: Original strand, 30035336 - 30035413
Alignment:
| Q |
361 |
atggttatcaatatcttaagatgcatgtgagacatatcttgattccatactaaactgaattaaatcaatacaaatctc |
438 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||| | ||||| |||| ||||| || |||||| |||| ||||||||||| |
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|
| T |
30035336 |
atggttatcagtatcttatgatacatgtgagtcgtatctcaattcaatacttaattgaattcaatcgatacaaatctc |
30035413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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