View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19940_low_5 (Length: 341)
Name: NF19940_low_5
Description: NF19940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19940_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 379715 - 380024
Alignment:
| Q |
19 |
ctgagtgccagtatttgacaagaaatagtccatcaaagaagcggaaacggaaacctaatagccagacagttggatttgaagatgttcaaagtgttgattc |
118 |
Q |
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| T |
379715 |
ctgagtgccagtatttgacaagaaatagtccatcgaagaagcggaaacggaaacctaatagccagacagttggatttgaagatgttcaaagtgttgattc |
379814 |
T |
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| Q |
119 |
tgcaaaagtagaactcatggaggtcaggtaaatatgttcaaatccatttgactattttcctggttacttggtagatacgctaaaagggtgtcttttgaaa |
218 |
Q |
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| T |
379815 |
tgcaaaagtagaactcatggaggt-----aaatatgttcaaatccttttgaatattttcctggttacttggtagatacgctaaaagggtgtcttttgaaa |
379909 |
T |
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| Q |
219 |
ttactcagttctcatttagatgcattgtcacaaaaatagtcctgattgcatcaaaatattcgactttgaaatgttttatgtgcatggagggagtattcat |
318 |
Q |
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| T |
379910 |
ttactcagttctcatttagatgcattgtcacaaaaatagtcccgattgcatcaaaatattcgactttaaaatgttttatgtgcatggagggagtattcat |
380009 |
T |
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| Q |
319 |
tgatttccaatctgt |
333 |
Q |
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| T |
380010 |
tgatttccaatctgt |
380024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 6298680 - 6298756
Alignment:
| Q |
66 |
cggaaacctaatagccagacagttggatttgaagatgttcaaagtgttgattctgcaaaagtagaactcatggaggt |
142 |
Q |
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| T |
6298680 |
cggaaacctaagagtcagacagttggatttgaagatgttcaaggtgttgattctgcaaaagtagaactcatggaggt |
6298756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 6305490 - 6305566
Alignment:
| Q |
66 |
cggaaacctaatagccagacagttggatttgaagatgttcaaagtgttgattctgcaaaagtagaactcatggaggt |
142 |
Q |
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| T |
6305490 |
cggaaacctaagagtcagacagttggatttgaagatgttcaaggtgttgattctgcaaaagtagaactcatggaggt |
6305566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 231 - 333
Target Start/End: Original strand, 6299225 - 6299323
Alignment:
| Q |
231 |
catttagatgcattgtcacaaaaatagtcctgattgcatcaaaatattcgactttgaaatgttttatgtgcatggagggagtattcattgatttccaatc |
330 |
Q |
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| T |
6299225 |
catttagatgcattgtcacaaaaataaccctgattgcatcaaaatattagactttgaaatgtttgatatgcat----ggagtattcactgatttccattc |
6299320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 231 - 333
Target Start/End: Original strand, 6306035 - 6306133
Alignment:
| Q |
231 |
catttagatgcattgtcacaaaaatagtcctgattgcatcaaaatattcgactttgaaatgttttatgtgcatggagggagtattcattgatttccaatc |
330 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| || ||||| |||||||||| ||||||||| || |
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| T |
6306035 |
catttagatgcattgtcacaaaaataaccctgattgcatcaaaatattagactttgaaatgtttgatatgcat----ggagtattcactgatttccattc |
6306130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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