View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19940_low_7 (Length: 239)
Name: NF19940_low_7
Description: NF19940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19940_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 45 - 238
Target Start/End: Original strand, 18113919 - 18114112
Alignment:
| Q |
45 |
aaataatgatcttcgcgaaggtagctgtcagttccatgaatcatcatttcacaaacccacttctgccactgtcaagttcttgttggcaaccaccaaatat |
144 |
Q |
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| T |
18113919 |
aaataatgatcgtcgccaaggtagctgtcagttccatgaatcatcatttcacaaacccacttctgccactgtcaagtttttgttggcaacgaccaaatat |
18114018 |
T |
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| Q |
145 |
aatatgggaaaaatgtgcatgaatggctccaattttacccatccgtcgatccaaaatttgattttcgagctgcaaattttaacaacatatcagt |
238 |
Q |
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| T |
18114019 |
aatatgggaaaaatgtgcatgaatggctccaattttacccatccgtcgatccaaaatttaattttctagccgcaaattttaacagcatatcagt |
18114112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 37 - 239
Target Start/End: Complemental strand, 17723047 - 17722845
Alignment:
| Q |
37 |
tccaaaccaaataatgatcttcgcgaaggtagctgtcagttccatgaatcatcatttcacaaacccacttctgccactgtcaagttcttgttggcaacca |
136 |
Q |
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| T |
17723047 |
tccaaactaaataatgatcatcaccaaggtagctgtcagttccatgcatcatcatttcataaacccacttctgccactgtcaagttcttgttggccacca |
17722948 |
T |
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| Q |
137 |
ccaaatataatatgggaaaaatgtgcatgaatggctccaattttacccatccgtcgatccaaaatttgattttcgagctgcaaattttaacaacatatca |
236 |
Q |
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| T |
17722947 |
ccaaatataatatgggaaaaatgtgcatgaatggctccaaatttacccatttgtcgatccaaaatttgattttcaagccgcaaattttaacagcatatca |
17722848 |
T |
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| Q |
237 |
gtc |
239 |
Q |
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||| |
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| T |
17722847 |
gtc |
17722845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 37 - 239
Target Start/End: Complemental strand, 19024276 - 19024074
Alignment:
| Q |
37 |
tccaaaccaaataatgatcttcgcgaaggtagctgtcagttccatgaatcatcatttcacaaacccacttctgccactgtcaagttcttgttggcaacca |
136 |
Q |
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||||||| ||||||||||| || | ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
19024276 |
tccaaactaaataatgatcatcaccaaggtagctgtcagttccatgcatcatcatttcataaacccacttctgccactgtcaagttcttgttggccacca |
19024177 |
T |
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| Q |
137 |
ccaaatataatatgggaaaaatgtgcatgaatggctccaattttacccatccgtcgatccaaaatttgattttcgagctgcaaattttaacaacatatca |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||| ||||||||||||| ||||||| |
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| T |
19024176 |
ccaaatataatatgggaaaaatgtgcatgaatggctccaaatttacccatttgtcgatccaaaatttgattttcaagccgcaaattttaacagcatatca |
19024077 |
T |
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| Q |
237 |
gtc |
239 |
Q |
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||| |
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| T |
19024076 |
gtc |
19024074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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