View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19941_high_1 (Length: 345)

Name: NF19941_high_1
Description: NF19941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19941_high_1
NF19941_high_1
[»] chr2 (1 HSPs)
chr2 (9-345)||(26049582-26049915)


Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 9 - 345
Target Start/End: Original strand, 26049582 - 26049915
Alignment:
Q  9 gagcacagagtaattatgattattgtaagttttagtagagaacaacacctataggctatagtactgttggtaagttttgcccttctgtgaaaacttgttg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||    
T  26049582 gagcacagagtaattatgattattgtaagttttagtagagaacaacacctataggctatagtactgttggcaagttttgccctactgtgaaaactggttg 26049681  T
Q  109 tcaagtaatgnnnnnnncttgatacccttgttttgtctcattttttatt--ctcctaatgaaaggaggataataagattaatatagaaaaagagagttgg 206  Q
    ||||||||||       ||||||||||||||||||||||||||||| ||  |||||||||||||||   |||||||||||||||||||||||||| ||||    
T  26049682 tcaagtaatgtttttttcttgatacccttgttttgtctcatttttttttttctcctaatgaaagga---taataagattaatatagaaaaagagaattgg 26049778  T
Q  207 tgaagtgtggtgttttgaatggacacggatggaggattggactgaaaaggggactgtttatttgggtccctttgggataggatgaattgatgaggttgag 306  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26049779 tgaagtgtggtgttttgaatggac--ggatggaggattggactgaaaaagggactgtttatttgggtccctttgggataggatgaattgatgaggttgag 26049876  T
Q  307 ctcgttacttgcagctatcaaaggcaggtacgacgagtt 345  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26049877 ctcgttacttgcagctatcaaaggcaggtacgacgagtt 26049915  T

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