View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19942_high_3 (Length: 429)

Name: NF19942_high_3
Description: NF19942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19942_high_3
NF19942_high_3
[»] chr4 (14 HSPs)
chr4 (197-347)||(20944155-20944305)
chr4 (20-102)||(20944400-20944482)
chr4 (232-410)||(20951399-20951577)
chr4 (20-102)||(20945387-20945469)
chr4 (27-100)||(5574332-5574405)
chr4 (27-83)||(54372889-54372945)
chr4 (27-98)||(17521942-17522013)
chr4 (27-100)||(5575427-5575500)
chr4 (29-82)||(54822522-54822575)
chr4 (25-83)||(49923680-49923738)
chr4 (28-94)||(54823176-54823242)
chr4 (28-81)||(31205627-31205680)
chr4 (27-80)||(54373869-54373922)
chr4 (28-100)||(31204680-31204752)
[»] chr3 (11 HSPs)
chr3 (27-100)||(2764003-2764076)
chr3 (25-98)||(8895284-8895357)
chr3 (28-93)||(50002546-50002611)
chr3 (27-100)||(44116599-44116672)
chr3 (25-83)||(14206696-14206754)
chr3 (25-83)||(14214444-14214502)
chr3 (37-83)||(48336490-48336536)
chr3 (32-94)||(50765434-50765496)
chr3 (27-100)||(2762915-2762988)
chr3 (27-100)||(44115563-44115636)
chr3 (28-100)||(50003141-50003213)
[»] chr7 (11 HSPs)
chr7 (27-100)||(24653584-24653657)
chr7 (26-83)||(29409154-29409211)
chr7 (28-94)||(40321201-40321267)
chr7 (28-100)||(35045812-35045884)
chr7 (28-99)||(35044747-35044818)
chr7 (28-83)||(42520364-42520419)
chr7 (25-83)||(4973964-4974022)
chr7 (25-95)||(22794237-22794307)
chr7 (37-83)||(29657133-29657179)
chr7 (37-81)||(29408391-29408435)
chr7 (27-83)||(32893600-32893656)
[»] chr5 (8 HSPs)
chr5 (26-100)||(30674746-30674820)
chr5 (27-100)||(25212948-25213021)
chr5 (27-100)||(25277100-25277173)
chr5 (28-100)||(38602789-38602861)
chr5 (37-83)||(14357809-14357855)
chr5 (26-83)||(30673463-30673520)
chr5 (25-102)||(30915621-30915698)
chr5 (25-81)||(33362482-33362538)
[»] chr2 (4 HSPs)
chr2 (25-95)||(12364321-12364391)
chr2 (25-83)||(12365933-12365991)
chr2 (28-100)||(38593157-38593228)
chr2 (28-100)||(38596753-38596824)
[»] chr8 (5 HSPs)
chr8 (25-86)||(35462904-35462965)
chr8 (25-81)||(11080947-11081003)
chr8 (26-86)||(3713187-3713247)
chr8 (26-86)||(3714452-3714512)
chr8 (27-83)||(20066221-20066277)
[»] chr1 (7 HSPs)
chr1 (27-100)||(51088662-51088735)
chr1 (25-83)||(49618574-49618632)
chr1 (29-86)||(52439204-52439261)
chr1 (25-83)||(40778515-40778573)
chr1 (25-83)||(45042752-45042810)
chr1 (29-94)||(9850101-9850166)
chr1 (27-99)||(40721912-40721983)
[»] chr6 (4 HSPs)
chr6 (28-100)||(13562214-13562286)
chr6 (25-83)||(682408-682466)
chr6 (25-97)||(1948847-1948919)
chr6 (28-100)||(13561404-13561476)
[»] scaffold1337 (1 HSPs)
scaffold1337 (28-83)||(376-431)
[»] scaffold0065 (1 HSPs)
scaffold0065 (25-81)||(35507-35563)
[»] scaffold0041 (1 HSPs)
scaffold0041 (25-97)||(1039-1111)


Alignment Details
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 197 - 347
Target Start/End: Complemental strand, 20944305 - 20944155
Alignment:
Q  197 gaattaagttaagggactaaatatgtaattaagccttataattattatctgattaattaatcttgactttctttacatttgagagtgtccaatatataat 296  Q
    ||||||||||||| |||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20944305 gaattaagttaagagactaaatatgtaattaaactttataattattatgtgattaattaatcttgactttctttacatttgagagtgtcctatatataat 20944206  T
Q  297 tgatattctatttagttatatgtatagatagattaagcttctataatttga 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20944205 tgatattctatttagttatatgtatagatagattaagcttctataacttga 20944155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 20944482 - 20944400
Alignment:
Q  20 aaacaaaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggaggt 102  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20944482 aaactaaaataaattaggtgttggtgatacacggttagatctaatagatctcatttatccaacgatcctcttttttaggaggt 20944400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 232 - 410
Target Start/End: Complemental strand, 20951577 - 20951399
Alignment:
Q  232 ttataattattatctgattaattaatcttgactttctttacatttgagagtgtccaatatataattgatattctatttagttatatgtatagatagatta 331  Q
    |||||||||  || ||||||||||| |||||||||||||  ||||| || |     |||||||||||||||| |||||| ||| |||||||||| ||| |    
T  20951577 ttataattaaaatgtgattaattaaccttgactttctttttatttgtgaattaagtatatataattgatattatatttaattacatgtatagatggataa 20951478  T
Q  332 agcttctataatttgagatgatgtttcgtatatatatgaacttcaatcacaagcctggaaacttaaggctgaggttgca 410  Q
     |||||||||||| |||||| |||||| |||||  ||||||||||||||||||||  ||| ||||||||||||||||||    
T  20951477 ggcttctataattggagatgctgtttcatatatgcatgaacttcaatcacaagccaagaagcttaaggctgaggttgca 20951399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 20945387 - 20945469
Alignment:
Q  20 aaacaaaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggaggt 102  Q
    |||| ||||||||||| ||||||||||||||  ||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  20945387 aaactaaaataaattaggtgttggtgatacacagttagatctaatagaactcatttatccaacggtcctcttttttaggaggt 20945469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 5574405 - 5574332
Alignment:
Q  27 aataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggag 100  Q
    |||||||||||| ||||||||||||| ||||||||   ||| ||| ||||||||||| || |||||||||||||    
T  5574405 aataaattaagttttggtgatacatgattagatctctcagacctcctttatccaacggtcttcttttttaggag 5574332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 54372945 - 54372889
Alignment:
Q  27 aataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacg 83  Q
    ||||||| | ||||||||||||||  ||||||||||||||| |||||||||||||||    
T  54372945 aataaatcaggtgttggtgatacacagttagatctaatagacctcatttatccaacg 54372889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 17522013 - 17521942
Alignment:
Q  27 aataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttagg 98  Q
    ||||||||||||||||||||||||  ||||||||| ||||| ||  ||||||||| | || |||||||||||    
T  17522013 aataaattaagtgttggtgatacactgttagatctcatagaccttgtttatccaatggtcttcttttttagg 17521942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 5575427 - 5575500
Alignment:
Q  27 aataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggag 100  Q
    |||||||||||| ||||||||||||| |||||||  | ||| ||| ||||||||||| ||  ||||||||||||    
T  5575427 aataaattaagtattggtgatacatgattagatcacacagacctcctttatccaacggtctccttttttaggag 5575500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 54822575 - 54822522
Alignment:
Q  29 taaattaagtgttggtgatacatggttagatctaatagatctcatttatccaac 82  Q
    ||||||| |||||||||||||||||||||||| ||| || ||| ||||||||||    
T  54822575 taaattatgtgttggtgatacatggttagatccaatggacctcctttatccaac 54822522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 49923680 - 49923738
Alignment:
Q  25 aaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacg 83  Q
    ||||||||| | ||||||||||||||  ||||||||| ||||| ||||| |||||||||    
T  49923680 aaaataaatcacgtgttggtgatacacagttagatctgatagacctcatctatccaacg 49923738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 54823176 - 54823242
Alignment:
Q  28 ataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttt 94  Q
    |||||||| |||||||| ||||||||||||||| ||| || |||  |||||||||| || |||||||    
T  54823176 ataaattatgtgttggtaatacatggttagatccaatggacctccattatccaacggtcttcttttt 54823242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 31205627 - 31205680
Alignment:
Q  28 ataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaa 81  Q
    |||||||| ||||||||||||||  ||||||||| || |||||| |||||||||    
T  31205627 ataaattatgtgttggtgatacaccgttagatctgatggatctcctttatccaa 31205680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 54373869 - 54373922
Alignment:
Q  27 aataaattaagtgttggtgatacatggttagatctaatagatctcatttatcca 80  Q
    ||||||| | ||||||||||||||  ||||||||| ||||| ||||||||||||    
T  54373869 aataaatcaggtgttggtgatacacagttagatcttatagacctcatttatcca 54373922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 31204752 - 31204680
Alignment:
Q  28 ataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggag 100  Q
    |||||||| ||||||||||||||  ||||||||| || ||  || ||||||||||| || ||||||| |||||    
T  31204752 ataaattatgtgttggtgatacactgttagatctgatggacatcctttatccaacggtcttctttttaaggag 31204680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 2764003 - 2764076
Alignment:
Q  27 aataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggag 100  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||  ||||||||||||    
T  2764003 aataaattaagtgttggtgatacatggttagatctcacagatctcctttatccaacggtctccttttttaggag 2764076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 8895357 - 8895284
Alignment:
Q  25 aaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttagg 98  Q
    ||||||||||| |||||||||||||| |||||||||| ||||| || |||||||| | ||||  ||||||||||    
T  8895357 aaaataaattacgtgttggtgatacacggttagatctgatagacctaatttatccgatgatctccttttttagg 8895284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 50002611 - 50002546
Alignment:
Q  28 ataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctctttt 93  Q
    |||||||| ||||||||||||||  ||||||||| || |||||| |||||||||||||| ||||||    
T  50002611 ataaattatgtgttggtgatacaccgttagatctgatggatctcctttatccaacgatcttctttt 50002546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 44116599 - 44116672
Alignment:
Q  27 aataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggag 100  Q
    |||||||||||||||||||||||||| ||| ||||   ||| ||| ||||||||||| ||  ||||||||||||    
T  44116599 aataaattaagtgttggtgatacatgtttaaatctcccagacctcctttatccaacggtctccttttttaggag 44116672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 14206696 - 14206754
Alignment:
Q  25 aaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacg 83  Q
    |||||||||||  | |||||||||||  ||||||||| ||||| |||||||||||||||    
T  14206696 aaaataaattagatattggtgatacacagttagatctgatagacctcatttatccaacg 14206754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 14214444 - 14214502
Alignment:
Q  25 aaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacg 83  Q
    |||||||||||  | |||||||||||  ||||||||| ||||| |||||||||||||||    
T  14214444 aaaataaattagatattggtgatacacagttagatctgatagacctcatttatccaacg 14214502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 48336536 - 48336490
Alignment:
Q  37 gtgttggtgatacatggttagatctaatagatctcatttatccaacg 83  Q
    ||||||||||||||  ||||||||||||| | |||||||||||||||    
T  48336536 gtgttggtgatacacagttagatctaataaacctcatttatccaacg 48336490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 50765496 - 50765434
Alignment:
Q  32 attaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttt 94  Q
    |||| ||||||| ||||||  ||||||| ||||  |||||||||||||||||||| |||||||    
T  50765496 attacgtgttggggatacacagttagatataatgaatctcatttatccaacgatcttcttttt 50765434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 2762988 - 2762915
Alignment:
Q  27 aataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggag 100  Q
    ||||||||| || ||||||||||||| |||||||| | | | ||| ||||||||||| ||  ||||||||||||    
T  2762988 aataaattaggtattggtgatacatgattagatctcacatacctcttttatccaacggtctccttttttaggag 2762915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 44115636 - 44115563
Alignment:
Q  27 aataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggag 100  Q
    ||||||||| || ||||||||||||| |||||||| | | | ||| ||||||||||| ||  ||||||||||||    
T  44115636 aataaattaggtattggtgatacatgattagatctcacaaacctcctttatccaacggtctccttttttaggag 44115563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 50003141 - 50003213
Alignment:
Q  28 ataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggag 100  Q
    |||||||| ||||||||||||||  ||||||||| || || ||| ||||||||||| || | ||||| |||||    
T  50003141 ataaattatgtgttggtgatacaccgttagatctgattgacctcctttatccaacggtcttatttttaaggag 50003213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 24653584 - 24653657
Alignment:
Q  27 aataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggag 100  Q
    |||||||||||||||||||||||||||||||||||   ||| ||| ||||||||||| ||  ||||||||||||    
T  24653584 aataaattaagtgttggtgatacatggttagatctcccagacctcctttatccaacggtctccttttttaggag 24653657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 29409154 - 29409211
Alignment:
Q  26 aaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacg 83  Q
    |||||||||| |||||||| |||||  ||||||||| |||||||||||||||||||||    
T  29409154 aaataaattaggtgttggttatacactgttagatctgatagatctcatttatccaacg 29409211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 40321267 - 40321201
Alignment:
Q  28 ataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttt 94  Q
    |||||||| ||||||||||||||  |||||||||||| || ||| ||||||||||| || |||||||    
T  40321267 ataaattatgtgttggtgatacactgttagatctaatggacctcctttatccaacggtcttcttttt 40321201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 35045812 - 35045884
Alignment:
Q  28 ataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggag 100  Q
    |||||||| ||||||||||||||| ||||||||  || |||||| ||||||||||| |  ||||||| |||||    
T  35045812 ataaattatgtgttggtgatacatcgttagatccgatggatctcctttatccaacggtattctttttaaggag 35045884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 35044818 - 35044747
Alignment:
Q  28 ataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttagga 99  Q
    |||||||| ||||||||||||||   ||||||||||| || ||| ||||||||||| || ||||||| ||||    
T  35044818 ataaattatgtgttggtgatacactcttagatctaatggacctcctttatccaacggtcttctttttaagga 35044747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 42520419 - 42520364
Alignment:
Q  28 ataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacg 83  Q
    |||||||| ||||||||||||||  ||||||||| ||||| ||| |||||||||||    
T  42520419 ataaattatgtgttggtgatacaccgttagatctgatagacctcctttatccaacg 42520364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 4973964 - 4974022
Alignment:
Q  25 aaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacg 83  Q
    ||||||||| | |||| |||||||||  ||||||||| ||||||||||| |||||||||    
T  4973964 aaaataaatcatgtgtcggtgatacacagttagatctgatagatctcatctatccaacg 4974022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 22794237 - 22794307
Alignment:
Q  25 aaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctctttttt 95  Q
    ||||||||| |  |||||||||||||   |||||||| ||||| ||||||||||||||||||  |||||||    
T  22794237 aaaataaatcagatgttggtgatacacaattagatctgatagacctcatttatccaacgatctcctttttt 22794307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 29657179 - 29657133
Alignment:
Q  37 gtgttggtgatacatggttagatctaatagatctcatttatccaacg 83  Q
    ||||||||||||||  ||||||||| |||| ||||||||||||||||    
T  29657179 gtgttggtgatacacagttagatctgatagttctcatttatccaacg 29657133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 29408435 - 29408391
Alignment:
Q  37 gtgttggtgatacatggttagatctaatagatctcatttatccaa 81  Q
    ||||||||||||||  ||||||||| ||||| |||||||||||||    
T  29408435 gtgttggtgatacaccgttagatctgatagacctcatttatccaa 29408391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 32893656 - 32893600
Alignment:
Q  27 aataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacg 83  Q
    ||||||| ||||||||||||||||  ||||||||| ||||| | || ||||||||||    
T  32893656 aataaatcaagtgttggtgatacacagttagatctgatagaccacacttatccaacg 32893600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 30674746 - 30674820
Alignment:
Q  26 aaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggag 100  Q
    |||||||||| ||||||||||||||||||||||||| | ||| ||| ||||| ||||| ||  ||||||||||||    
T  30674746 aaataaattaggtgttggtgatacatggttagatcttacagacctcctttattcaacggtctccttttttaggag 30674820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 25212948 - 25213021
Alignment:
Q  27 aataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggag 100  Q
    ||||||||| || ||||||||||||| |||||||| | | | ||| ||||||||||| || |||||||||||||    
T  25212948 aataaattaggtattggtgatacatgattagatctcacaaacctcctttatccaacggtcttcttttttaggag 25213021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 25277100 - 25277173
Alignment:
Q  27 aataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggag 100  Q
    ||||||||| || ||||||||||||| |||||||| | | | ||| ||||||||||| || |||||||||||||    
T  25277100 aataaattaggtattggtgatacatgattagatctcacaaacctcctttatccaacggtcttcttttttaggag 25277173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 38602861 - 38602789
Alignment:
Q  28 ataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggag 100  Q
    |||||||||||||||||||||||| ||||||||| ||  || || ||||||||||  || ||||||| |||||    
T  38602861 ataaattaagtgttggtgatacattgttagatctgatgaatatcttttatccaactgtcttctttttgaggag 38602789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 14357809 - 14357855
Alignment:
Q  37 gtgttggtgatacatggttagatctaatagatctcatttatccaacg 83  Q
    ||||||||||||||  ||||||| | |||||||||||||||||||||    
T  14357809 gtgttggtgatacacagttagatatgatagatctcatttatccaacg 14357855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 30673520 - 30673463
Alignment:
Q  26 aaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacg 83  Q
    |||||||||| |||||||||||||||||||| |||| | | | ||| |||||||||||    
T  30673520 aaataaattaggtgttggtgatacatggttaaatctcacaaacctcctttatccaacg 30673463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 30915698 - 30915621
Alignment:
Q  25 aaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggaggt 102  Q
    ||||||||| | ||||||||||||||  ||||||||| ||||| ||||| ||||||| | ||  ||||||| ||||||    
T  30915698 aaaataaatcaggtgttggtgatacacagttagatctgatagacctcatatatccaatggtctcctttttttggaggt 30915621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 33362482 - 33362538
Alignment:
Q  25 aaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaa 81  Q
    ||||||||| | || |||||||||||  ||||||||| ||||| |||||||||||||    
T  33362482 aaaataaataaggtattggtgatacacagttagatctgatagacctcatttatccaa 33362538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 12364391 - 12364321
Alignment:
Q  25 aaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctctttttt 95  Q
    ||||||||||| ||||||||||||||  ||||||||| ||||| ||||||||||||| | ||| |||||||    
T  12364391 aaaataaattatgtgttggtgatacacagttagatctgatagacctcatttatccaatggtcccctttttt 12364321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 12365933 - 12365991
Alignment:
Q  25 aaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacg 83  Q
    ||||||||| | ||||||||||||||  |||| |||| |||||||||||||||||||||    
T  12365933 aaaataaatcaggtgttggtgatacacagttatatctgatagatctcatttatccaacg 12365991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 38593228 - 38593157
Alignment:
Q  28 ataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggag 100  Q
    |||||||||||||||||||||||   |||||||| || |||||| ||||||||||| || ||||||| |||||    
T  38593228 ataaattaagtgttggtgatacactattagatctgatggatctc-tttatccaacggtcttctttttgaggag 38593157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 38596824 - 38596753
Alignment:
Q  28 ataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggag 100  Q
    |||||||||||||||||||||||   |||||||| || |||||| ||||||||||| || ||||||| |||||    
T  38596824 ataaattaagtgttggtgatacactattagatctgatggatctc-tttatccaacggtcttctttttgaggag 38596753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 35462904 - 35462965
Alignment:
Q  25 aaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatc 86  Q
    ||||||||||| ||||||||||||||  ||||||||  ||||| ||||||||||||||||||    
T  35462904 aaaataaattaggtgttggtgatacactgttagatcagatagacctcatttatccaacgatc 35462965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 11080947 - 11081003
Alignment:
Q  25 aaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaa 81  Q
    ||||||||| | ||||||||||||||  ||||||||| ||||| |||||||||||||    
T  11080947 aaaataaatcaggtgttggtgatacacagttagatctgatagacctcatttatccaa 11081003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 3713247 - 3713187
Alignment:
Q  26 aaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatc 86  Q
    |||||||| ||||||| ||||||||   | ||||||||||||||||  |||||||||||||    
T  3713247 aaataaatcaagtgtttgtgatacactataagatctaatagatctcccttatccaacgatc 3713187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 3714452 - 3714512
Alignment:
Q  26 aaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatc 86  Q
    |||||||| ||||||||||||||||   | |||||| |||||||||  |||||||||||||    
T  3714452 aaataaatcaagtgttggtgatacactataagatctgatagatctcccttatccaacgatc 3714512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 20066277 - 20066221
Alignment:
Q  27 aataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacg 83  Q
    ||||||||| ||||||||||||||  |||| |||| || |||||| |||||||||||    
T  20066277 aataaattaggtgttggtgatacactgttaaatctgatggatctcttttatccaacg 20066221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 51088735 - 51088662
Alignment:
Q  27 aataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggag 100  Q
    |||||||||||||||||||||||||| |||||| | | ||| ||| ||||||||||| ||  ||||||||||||    
T  51088735 aataaattaagtgttggtgatacatgattagatatcacagacctcctttatccaacggtctccttttttaggag 51088662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 49618632 - 49618574
Alignment:
Q  25 aaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacg 83  Q
    ||||||||| |||||||||||||||   ||||||||| ||||| |||||||||||||||    
T  49618632 aaaataaatcaagtgttggtgatactcagttagatctgatagacctcatttatccaacg 49618574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 52439204 - 52439261
Alignment:
Q  29 taaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatc 86  Q
    ||||||| ||||||||||||||  ||||||||| |||||  |||||||||||||||||    
T  52439204 taaattaggtgttggtgatacacagttagatctgatagacttcatttatccaacgatc 52439261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 40778573 - 40778515
Alignment:
Q  25 aaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacg 83  Q
    ||||||||| | |||  |||||||||  ||||||||||||||| |||||||||||||||    
T  40778573 aaaataaatcaggtgccggtgatacacagttagatctaatagacctcatttatccaacg 40778515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 45042810 - 45042752
Alignment:
Q  25 aaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacg 83  Q
    |||||||||||  ||||| ||||||| |||||||||| ||| | |||||||||||||||    
T  45042810 aaaataaattagatgttgatgatacacggttagatctgatatacctcatttatccaacg 45042752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 9850166 - 9850101
Alignment:
Q  29 taaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttt 94  Q
    ||||||| |||||||||||||||||||||||| ||| || ||| ||| | ||||| || |||||||    
T  9850166 taaattatgtgttggtgatacatggttagatccaattgacctccttttttcaacggtcttcttttt 9850101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 40721983 - 40721912
Alignment:
Q  27 aataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttagga 99  Q
    ||||||||| |||||| |||||||  |||| ||||||| || ||| ||||||||||||| ||| |||||||||    
T  40721983 aataaattaggtgttgatgatacaccgttaaatctaatggacctcctttatccaacgat-ctcctttttagga 40721912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 13562214 - 13562286
Alignment:
Q  28 ataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggag 100  Q
    |||||||| ||||||||||||||  ||||||||| || |||||| ||||||||||  || |||||||||||||    
T  13562214 ataaattaggtgttggtgatacactgttagatctgatggatctcctttatccaacagtcttcttttttaggag 13562286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 682466 - 682408
Alignment:
Q  25 aaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacg 83  Q
    ||||||||| ||||||||||||||||  | ||||||| ||||| |||||||||||||||    
T  682466 aaaataaatcaagtgttggtgatacacagctagatctgatagacctcatttatccaacg 682408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 1948919 - 1948847
Alignment:
Q  25 aaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttag 97  Q
    ||||| ||||| ||||||||||||||| |||| |||| ||  ||||| ||||||||||| || ||||||||||    
T  1948919 aaaattaattatgtgttggtgatacatcgttacatcttatgaatctcttttatccaacggtcttcttttttag 1948847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 13561476 - 13561404
Alignment:
Q  28 ataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttaggag 100  Q
    |||||||| ||||||||||||||   |||||||| || || ||  |||||||||||||| ||||||| |||||    
T  13561476 ataaattaggtgttggtgatacactattagatctgatggaccttctttatccaacgatcttctttttgaggag 13561404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1337 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1337
Description:

Target: scaffold1337; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 431 - 376
Alignment:
Q  28 ataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacg 83  Q
    |||||||| |||||||||||||| |||||||| | | |||||||||||||||||||    
T  431 ataaattaggtgttggtgatacacggttagatatgacagatctcatttatccaacg 376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 35563 - 35507
Alignment:
Q  25 aaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaa 81  Q
    ||||||||||| ||||||||||||||  ||||||||| ||| | |||||||||||||    
T  35563 aaaataaattaggtgttggtgatacacagttagatctgataaacctcatttatccaa 35507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 1039 - 1111
Alignment:
Q  25 aaaataaattaagtgttggtgatacatggttagatctaatagatctcatttatccaacgatcctcttttttag 97  Q
    ||||||||||  |||||||||||||| |||||||||| ||| |  |||||||| ||||| ||  |||||||||    
T  1039 aaaataaatttggtgttggtgatacacggttagatctgatatacttcatttattcaacggtctccttttttag 1111  T

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