View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19942_high_6 (Length: 329)
Name: NF19942_high_6
Description: NF19942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19942_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 33588621 - 33588931
Alignment:
| Q |
14 |
cttctacatatacacacaccatatatgcccatatttgatatgatatgtctcactttgttttt-gttgggaatatgatatgtctcact----tgatcgaca |
108 |
Q |
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| T |
33588621 |
cttctacatatacacacaccatatatgcccatatttgatatgatatgtctcacttttttttttgttgggaaaatgat--gtctcactagcttgatcggca |
33588718 |
T |
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| Q |
109 |
ccnnnnnnnnnntatcactccacactaagcaaccacgtcctccaaagtactctacgatgtggttatgaaagaagatgggtctttcttgaggggtccttga |
208 |
Q |
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| T |
33588719 |
ccaaaaaaaaaatatcactccacactaagccaccacgtcctccaaagtactctacgatgtggttatgaaagaagatgggtctttcttgaggggtccttga |
33588818 |
T |
|
| Q |
209 |
caattacaagattcattcccacgtttttctttcc---nnnnnnnnnccacatgcataaccattctctccataaaattctttctactcccatcctttgcca |
305 |
Q |
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| T |
33588819 |
caattacaagattcattcccacgtttttctttccttttttttttttccacatgcataaccattctctccataaaattatttctactcccatccttttcca |
33588918 |
T |
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| Q |
306 |
ctcatctaatctc |
318 |
Q |
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||||||| ||||| |
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| T |
33588919 |
ctcatctcatctc |
33588931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 33601917 - 33601972
Alignment:
| Q |
184 |
tgggtctttcttgaggggtccttgacaattacaagattcattcccacgtttttcttt |
240 |
Q |
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||||||||||||||||||||||| | |||||||| ||||| ||||||||| ||||| |
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| T |
33601917 |
tgggtctttcttgaggggtcctt-aaaattacaatattcaaccccacgtttatcttt |
33601972 |
T |
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