View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19942_high_8 (Length: 221)
Name: NF19942_high_8
Description: NF19942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19942_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 47578359 - 47578536
Alignment:
| Q |
13 |
aatataaaaaatgagagaaaaatattttagaagggactagggagatatacaaaagacataca--ttttcggccttaacactatgcttgtgtggttagatt |
110 |
Q |
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| T |
47578359 |
aatataaaaaatgagagaaaaatattatagaaggaa-------gatatacaaaagacatacacattttcggccttaacactatgcttgtgtggttagatt |
47578451 |
T |
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| Q |
111 |
tnnnnnnngagaaataacaaagaactttgctactcaaccatcaaatttatctcccttatttctatcgttaatatgttctataaca |
195 |
Q |
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| T |
47578452 |
taaaaaaagagaaataacaaagaactttgctactcaaccatcaaatttatctcccttatttctatcgttaatatgttctataaca |
47578536 |
T |
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