View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19942_low_1 (Length: 660)
Name: NF19942_low_1
Description: NF19942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19942_low_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 172 - 637
Target Start/End: Original strand, 4383331 - 4383786
Alignment:
| Q |
172 |
gaaagcataccattaaactcaagtcaaaaacccataagaaagccaaacacaattcataagtcacaaattaaaaccttaagcaagtattaagcttttaaca |
271 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
4383331 |
gaaagcataccattaaactcaagtgaaaa-cccataagaaagccaaacacaattcacaagtcacaaattaaaaccttaagcaagtattaaggatttaaca |
4383429 |
T |
|
| Q |
272 |
agtaccaagataaacatcgataatagtcaaattctaggcatttaatcagaaacttccatttgatcttcatcttccatttcatcttcgtctccatcttcat |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4383430 |
agtaccaagataaacatcgataatagtcaaattctaggtatttaatcagaaacttccatttgatcttca------------tcttcgtctccatcttcat |
4383517 |
T |
|
| Q |
372 |
cttcgtctccaactccatattcatcatacaaatcagcaatcacatcatgttgagactttagatatcgagtagcttcaatttttccatttcgccaaaaaac |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4383518 |
cttcgtctccaactccatattcatcatacaaatcagcaatcacatcacgttgagactttagatatcgagtagcttcaatttttccatttcgccaaacaac |
4383617 |
T |
|
| Q |
472 |
ccttctagctttctctacagccaattttgaattagccatgacaaagacagcatcattatacgccttttgccacaaaaggtttcttctcttagcatgaacc |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4383618 |
ccttctagctttctctacagccaattttgaattagccatgacaaagacagcatcattataagccttttgccacaaaaggtttcttctcttagcatgaacc |
4383717 |
T |
|
| Q |
572 |
tgaacaaatatagatacaattaagataatcagg---tactactaagtattttacaattcacattcaata |
637 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
4383718 |
tgaacaaatatagatacaattaagataatcaggtactactactaagtattttacaattcacattcaata |
4383786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 206 - 637
Target Start/End: Original strand, 4375746 - 4376212
Alignment:
| Q |
206 |
taagaaagccaaacacaattcataagtcacaaattaaaaccttaagc----aagtattaagcttttaacaagtaccaag--ataaacatcgataatagtc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||| ||||||||| |
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|
| T |
4375746 |
taagaaagccaaacacaattcataagtcacaaattaaaaccttaagctatatagtattaagcttttaaaaagtaccaagacataaacatcaataatagtc |
4375845 |
T |
|
| Q |
300 |
aaattctaggcatttaatc-agaaa--cttcc--atttgatcttcatcttccat------ttcatcttcgtctccatcttcatcttcgtctccaactcca |
388 |
Q |
| |
|
|||||||||| |||||||| ||||| ||| | |||| ||| ||||||||| |||||||| ||||| ||||| | |||| |||||||||||| |
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|
| T |
4375846 |
aaattctaggtatttaatctagaaaatctttcaaatttaatcagaatcttccatttgatcttcatctttgtctctatcttgaacttcatctccaactcca |
4375945 |
T |
|
| Q |
389 |
tattcatcatacaaatcagcaatcacatcatgttgagactttagatatcgagtagcttcaatttttccatt------------------tcgccaaaaaa |
470 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||| |||||| ||||| ||||| | |||||||| | || || || |
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|
| T |
4375946 |
tattcatcatacaaatcagcaatcacgtcatgtagagacttaagatatggagtaccttcactgtttccattatccttcagattttgaagtagctcaataa |
4376045 |
T |
|
| Q |
471 |
cccttctagctttctctacagccaattttgaattagccatgacaaagacagcatcattatacgccttttgccacaaaaggtttcttctcttagcatgaac |
570 |
Q |
| |
|
|| ||| ||||| ||| |||||||||||||||||||||||||||||| || ||||||||| |||||||||||| |||||||||||||||||| || |
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|
| T |
4376046 |
accatcttgctttgtcttcagccaattttgaattagccatgacaaagagagaatcattataaatattttgccacaaagagtttcttctcttagcatggac |
4376145 |
T |
|
| Q |
571 |
ctgaacaaatatagatacaattaagataatcaggt-actactaagtattttacaattcacattcaata |
637 |
Q |
| |
|
|| |||||||| | ||||||||| |||| || || | | ||| |||||||||||||||||||||||| |
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|
| T |
4376146 |
ct-aacaaatacaaatacaattagcataagcaagtaagtgctatgtattttacaattcacattcaata |
4376212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 311 - 637
Target Start/End: Original strand, 4388553 - 4388907
Alignment:
| Q |
311 |
atttaatcagaaacttccatttgatcttcatcttccatttcatc---------ttcgtctccatcttcatcttcgtctccaactccatattcatcataca |
401 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||| |
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|
| T |
4388553 |
atttaatcagaatcttccatttgatcttcatcttccatttcatcatcttcatcttcgtctccatcttcaacttcatctccaactccatattcatcataca |
4388652 |
T |
|
| Q |
402 |
aatcagcaatcacatcatgttgagactttagatatcgagtagcttcaatttttccatt------------------tcgccaaaaaacccttctagcttt |
483 |
Q |
| |
|
||| |||||||||||||||| | || || |||| | ||||| ||||||| ||||||| | || || || || ||| ||||| |
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|
| T |
4388653 |
aataagcaatcacatcatgtagggatttcagatttggagtaccttcaatgcttccattatccttcagattttgaactagctcaacaaaccatctggcttt |
4388752 |
T |
|
| Q |
484 |
ctctacagccaattttgaattagccatgacaaagacagcatcattatacgccttttgccacaaaaggtttcttctcttagcatgaacctgaacaaatata |
583 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| |||||||||| | |||||||||||||||||||| |||||||||| |||| ||||||| | |
|
|
| T |
4388753 |
ctcttcagccaattttgaattagccatgacatagacaacatcattataagttttttgccacaaaaggtttctgttcttagcatggacctaaacaaattca |
4388852 |
T |
|
| Q |
584 |
gatacaattaagataatcaggt-actactaagtattttacaattcacattcaata |
637 |
Q |
| |
|
|||||||||| |||| || || | | ||| ||||||||||||| |||||||||| |
|
|
| T |
4388853 |
aatacaattaatataagcaagtaagtgctaggtattttacaattgacattcaata |
4388907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 4383172 - 4383257
Alignment:
| Q |
13 |
atactcctataaactaggaaaacatacataagtaattattccagataaatcaagaatgtcatgaatttgcaagatcctacagagtt |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4383172 |
atactcctataaactaggaaaacatacataagtaattattccagataaatcaagaatgtcatgaatttgcaagatcctacagagtt |
4383257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 198 - 318
Target Start/End: Original strand, 4388413 - 4388537
Alignment:
| Q |
198 |
aaaacccataagaaagccaaacacaattcataagtcacaaattaaaaccttaagc--aagtattaagcttttaacaagtaccaag--ataaacatcgata |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4388413 |
aaaacccataagaaagccaaacacaattcataagtcacaaattcataccttaagctatagtattaagcttttaacaagtaccaagatataaacatcgata |
4388512 |
T |
|
| Q |
294 |
atagtcaaattctaggcatttaatc |
318 |
Q |
| |
|
| |||||||||||||| |||||||| |
|
|
| T |
4388513 |
acagtcaaattctaggtatttaatc |
4388537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 489 - 636
Target Start/End: Complemental strand, 4415780 - 4415636
Alignment:
| Q |
489 |
cagccaattttgaattagccatgacaaagacagcatcattatacgccttttgccacaaaaggtttcttctcttagcatgaacctgaacaaatatagatac |
588 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||| ||| |||| | |||||||| |||| |||||||||||||||| || |||| || |||| | |||| |
|
|
| T |
4415780 |
cagctaattttgaattaaccatgacaaaaacaacattattacgggtcttttgcctcaaacggtttcttctcttagcgtggacctataccaatacaaatac |
4415681 |
T |
|
| Q |
589 |
aattaagataatcaggtactactaagtattttacaattcacattcaat |
636 |
Q |
| |
|
|||||| |||| || | || || ||||||||||||||| ||||||| |
|
|
| T |
4415680 |
aattaatataagca---agtagtaggtattttacaattcatattcaat |
4415636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 4364181 - 4364239
Alignment:
| Q |
218 |
acacaattcataagtcacaaattaaaaccttaagc--aagtattaagcttttaacaagt |
274 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
4364181 |
acacaattcataagtcacaaattacaaacttaagcttgagtattaagcttttaacaagt |
4364239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 442
Target Start/End: Complemental strand, 4415931 - 4415876
Alignment:
| Q |
387 |
catattcatcatacaaatcagcaatcacatcatgttgagactttagatatcgagta |
442 |
Q |
| |
|
||||||||||| |||||||||||||||||||| | ||||||| |||||| ||||| |
|
|
| T |
4415931 |
catattcatcacgcaaatcagcaatcacatcatatagagacttcagatatggagta |
4415876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 252
Target Start/End: Complemental strand, 5727095 - 5727061
Alignment:
| Q |
218 |
acacaattcataagtcacaaattaaaaccttaagc |
252 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
5727095 |
acacaattcataagtcacaaattataaccttaagc |
5727061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 4375602 - 4375639
Alignment:
| Q |
28 |
aggaaaacatacataagtaattattccagataaatcaa |
65 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
4375602 |
aggaaaacatacatacgtaattattcaagataaatcaa |
4375639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 264 - 636
Target Start/End: Complemental strand, 3596363 - 3595952
Alignment:
| Q |
264 |
ttttaacaagtaccaaga--taaacatcgataatagtcaaattctaggcatttaatc-agaaa--cttcca--tttgatcttcatcttccatttcatctt |
356 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| | |||||||| ||||| ||| | ||| ||| || |||||||| ||||| |
|
|
| T |
3596363 |
ttttaacaagtaccaagacataaacatcgataatagtcaaattctaagtatttaatctagaaaatctttaaaatttaatcagaatattccatttgatctt |
3596264 |
T |
|
| Q |
357 |
cgtctccatcttcatcttcg-------tctccaactccatattcatcatacaaatcagcaatcacatcatgttgagactttagatatcgagtagcttcaa |
449 |
Q |
| |
|
| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| | |||| |
|
|
| T |
3596263 |
catcttcatcttcatcttcaactctcatctccaactccatattcatcatacaaatcagcaatcacatcatgtagagacttcagatatggagtaccatcaa |
3596164 |
T |
|
| Q |
450 |
tttttccatt------------------tcgccaaaaaacccttctagctttctctacagccaattttgaattagccatgacaaagacagcatcattata |
531 |
Q |
| |
|
| |||||||| |||| || || || ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3596163 |
tgtttccattatccttcagattttgaattcgctcaacaaaccatctagctttctcttcagccaattttgaattagccatgacaaagacaacatcattata |
3596064 |
T |
|
| Q |
532 |
cgccttttgccacaaaaggtttcttctcttagcatgaacctga------acaaatatagatacaattaagataatcaggt-actactaagtattttacaa |
624 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||| | ||||||| | ||||||||||||||| || | | ||||| ||||||||||| |
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|
| T |
3596063 |
agttttttgccacaaaaggtttcttctcttagcatggacctaaacaaatacaaatacaaatacaattaagataagcaattaagtactatgtattttacaa |
3595964 |
T |
|
| Q |
625 |
ttcacattcaat |
636 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3595963 |
ttcacattcaat |
3595952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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