View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19942_low_5 (Length: 410)
Name: NF19942_low_5
Description: NF19942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19942_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 114 - 393
Target Start/End: Original strand, 36960655 - 36960934
Alignment:
| Q |
114 |
tccacaatgacatcgcagccgcaatcgcatttgattgcatttttcacaatatcatagatcttattgtaaccgcaaccacaatttaaaaccatgaaccata |
213 |
Q |
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| T |
36960655 |
tccacaatcacatcgcagccgcaatcgcatttgattgcatttttcacaatatcatagatcttattgtaaccgcaaccacaatttaaaaccatgaaccata |
36960754 |
T |
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| Q |
214 |
aaaataagtaataataaccaagaaaagatcataatctaagtagtttatatactatataagcaaaaggctaagaaaacagacaagaagagcaaatcataga |
313 |
Q |
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| T |
36960755 |
aaaagaagtaataataaccaagaaaagatcataatctaagtagtttatatactatataagcaaaaagctaagaaaacagacaagaagagcaaatcataga |
36960854 |
T |
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| Q |
314 |
gagtattccactctcacttgttctgagtagggtttgggatgctaggtggtgctatcctcatacttggttccacaactttc |
393 |
Q |
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| T |
36960855 |
gagtattcctctctcacttgttctgagtagggtttgggatgctaggtggtgctatcctcatacttggttccacaactttc |
36960934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 36960518 - 36960637
Alignment:
| Q |
1 |
tttttactttgaattctagttcatatgtacattttcttccatcctagtctctctaaatccttaaacattacaagtaaaatggttttagattgcagtctcc |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36960518 |
tttttattttgaattctagttcatatgtacattttcttccatcctagtctctctaaatccttaaacattacaagtaaaatggttttagattgcagtctcc |
36960617 |
T |
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| Q |
101 |
gactgcaaatgcatccacaa |
120 |
Q |
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| T |
36960618 |
aactacaaatgcatccacaa |
36960637 |
T |
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