View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19942_low_6 (Length: 351)
Name: NF19942_low_6
Description: NF19942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19942_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 166 - 334
Target Start/End: Complemental strand, 23421517 - 23421349
Alignment:
| Q |
166 |
tttaataatcgtttggtttggcgtttgcaattgaattctagcgtcacaatgccacttcaacgtgactttacaaagctagaaattcttgcttcagcctaga |
265 |
Q |
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| T |
23421517 |
tttaataattgtttggtttggcgtttgcaattgaattctagcgtcacaatgccacttcaacgtgactttacaaagctagaaattcttgcttcagcctaga |
23421418 |
T |
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| Q |
266 |
catcattgatggcctgtccaccgcaattctaaacactgcattaggaggatggttattaggattattgtg |
334 |
Q |
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| T |
23421417 |
catcattgatggcctgtccaccgcaattctaaacactgcattaggaggatggttattaggattattgtg |
23421349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 166 - 334
Target Start/End: Original strand, 23877614 - 23877783
Alignment:
| Q |
166 |
tttaataatcgtttggtttggcgtttgcaattgaattctagcgtcacaatgccacttcaacgtgacttt-acaaagctagaaattcttgcttcagcctag |
264 |
Q |
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| T |
23877614 |
tttaataatcgtttagtttggcatttgcaattgaattctagcgtcacaatgccactttaacgtgaattttatgaagctagaaattcttgcttcagcctag |
23877713 |
T |
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| Q |
265 |
acatcattgatggcctgtccaccgcaattctaaacactgcattaggaggatggttattaggattattgtg |
334 |
Q |
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| T |
23877714 |
acatcgttgatggcctgtccaccgcaattttgaacactgcattaggaggatgtttattaggattactgtg |
23877783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 23421796 - 23421641
Alignment:
| Q |
14 |
atcagatgcaagctcaacagtttcagtagccacaacgagaaacccaagctagcaagaaagnnnnnnn-gtgaacttccaagtgaagttg---agaactta |
109 |
Q |
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| T |
23421796 |
atcagatgcaagctcaacagtttcagtagccacaacgagaaatccaagctagcaagaaagaaaaaaaagtgaacttccaagtgaagttgttgagaactta |
23421697 |
T |
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| Q |
110 |
aggtgtaaaaattaacaaataatgaaagtttcaagtgaggggaataatacggttgg |
165 |
Q |
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| T |
23421696 |
agttgtaaaaattaacaaataatgaaagtttcaagtgaggggaataatacggttgg |
23421641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 23 - 164
Target Start/End: Original strand, 23877263 - 23877408
Alignment:
| Q |
23 |
aagctcaacagtttcagtagccacaacgagaaacccaagctagcaagaaagnnnnnnngtgaactt-ccaagtgaagttg---agaacttaaggtgtaaa |
118 |
Q |
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| T |
23877263 |
aagctaaacagtttcagtagccacaatgagaaatccaagctagcaagaaagaaaaaaagtgaactttccaaatgaagttgttgaaaatttaaggtgtaaa |
23877362 |
T |
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| Q |
119 |
aattaacaaataatgaaagtttcaagtgaggggaataatacggttg |
164 |
Q |
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| T |
23877363 |
tattaacaaataatgaaagtttcaagtgaagggaataatacggttg |
23877408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 23877530 - 23877590
Alignment:
| Q |
166 |
tttaataatcgtttggtttggcgtttgcaattgaattctagcgtcacaatgccacttcaac |
226 |
Q |
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| T |
23877530 |
tttaataatcgtttagtttggcatttgcaattgaattctagcatcacaatgccacttcaac |
23877590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 37943189 - 37943344
Alignment:
| Q |
14 |
atcagatgcaagctcaacagtttcagtagccacaacgagaaacccaagctagcaagaaagnnnnnnn-gtgaacttccaagtgaagttg---agaactta |
109 |
Q |
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| T |
37943189 |
atcagatgcaagctcaacagtttcagtagccatgatgagaaatcgaagctaggaagaaagaagaaaaagtgtactactaagtgaagttgttgagaactta |
37943288 |
T |
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| Q |
110 |
aggtgtaaaaattaacaaataatgaaagtttcaagtgaggggaataatacggttgg |
165 |
Q |
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| T |
37943289 |
aggtgtagagattaacaaataaagaaagtttcaagtgaagggaataatatggttgg |
37943344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 265
Target Start/End: Original strand, 6276471 - 6276564
Alignment:
| Q |
173 |
atcgtttggtttggcgtttgcaattgaattctagcgtcacaatgccacttcaacgtgac-tttacaaagctagaaattcttgcttcagcctaga |
265 |
Q |
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| T |
6276471 |
atcgattggtttggtgtttacaattgaattcttgtgttccattgccactttaacgtgacttttaggaagcttgaaaatcttgctccagcctaga |
6276564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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