View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19943_high_4 (Length: 371)
Name: NF19943_high_4
Description: NF19943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19943_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 361
Target Start/End: Complemental strand, 6976018 - 6975665
Alignment:
| Q |
13 |
ctaactaaatacacaacgcatgtaacaatcatgggatgttatgattgatacacgagtctcaactctcacgtctcatgtgtaagaaattaataataattta |
112 |
Q |
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| T |
6976018 |
ctaactaaatacacaacgcatgtaacaatcatgggatgttatgattgatacacgagtctcaactctcacgtctcatgtgtaagaaattaataataattta |
6975919 |
T |
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| Q |
113 |
atacgtacgaagtacttggctatagttnnnnnnnntgattttcaaattacaaacaattttgctatatataaaacaaattggagattctattatcatgtca |
212 |
Q |
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| T |
6975918 |
atacgtacgaagtacttggctatagttaaaaaaaatgattttcaaattacaaacaattttgctatatataaaacaaattggagattctattatcatgtca |
6975819 |
T |
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| Q |
213 |
ctcgtatgcataatactatacaccatttatgagaaattgattgttaaatcgatgtgta----atcactt-caaaatactatccttaagaattaaggattt |
307 |
Q |
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| T |
6975818 |
ctcgtatgcataatactatacaccatttatgacaaattgattgttaaatcgatgtgtaatcgatcacttccaaaatactatccttaagaattaagggttt |
6975719 |
T |
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| Q |
308 |
tatccgttaactaatcaataagttagattatcataagagtcttttttgcctatg |
361 |
Q |
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| T |
6975718 |
tatccattatctaatcaataagttagattagcataagagtcttttttgcctatg |
6975665 |
T |
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