View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19943_high_5 (Length: 363)
Name: NF19943_high_5
Description: NF19943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19943_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 32532979 - 32532827
Alignment:
| Q |
1 |
actcatcatatgttatgggtaacttttgttttctatcaatatacactccaaattttttattgttaatattattatcttcagattataattattgtattat |
100 |
Q |
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| T |
32532979 |
actcatcatatgttatgggtaacttttgttttctatcaatatacactccaaattttttattgttaatattattatcttcagattataattattgtattat |
32532880 |
T |
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| Q |
101 |
gagtcagattataatgaccaaaatctaaccaaaaacaaataaagattacaatt |
153 |
Q |
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| T |
32532879 |
gagtcagattataatgaccaaaatctaaccaaaaacaaataaagattacaatt |
32532827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 183 - 341
Target Start/End: Complemental strand, 32532833 - 32532674
Alignment:
| Q |
183 |
tacaattgtacaaaagaatcttaaataaatgaaagagattttacaaagatctagtggnnnnnnnnnc-catcatgcacataattgaccaaagattcccgt |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32532833 |
tacaattgtacaaaagaatcttaaataaatgaaagagattttacaaagatctagtggtttttttttttcatcatgcacataattgaccaaagattcccgt |
32532734 |
T |
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| Q |
282 |
gacactttaatctgcacaaaaaataaaacccctacttattacgtttccccctcacatgtc |
341 |
Q |
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| T |
32532733 |
gacactttaatctgcacaaaaaataaaacccctacttattacgtttccccctcacatgtc |
32532674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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