View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19943_low_10 (Length: 259)
Name: NF19943_low_10
Description: NF19943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19943_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 19544817 - 19544586
Alignment:
| Q |
19 |
ttaaaggcataagtggaggtcagaaaaggagagttagcatttgcattgagatccttacacgcccaaaacttctttttcttgatgaaccaaccagtggact |
118 |
Q |
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| T |
19544817 |
ttaaaggcataagtggaggtcagaaaaggagagttagcatttgcattgagatccttacacgtccaaaacttctttttcttgatgaaccaacaagtggact |
19544718 |
T |
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| Q |
119 |
tgatagtgctgcttcttactatgttatgacaataattgctaccttggatcataaagatggcattcagaggactattattacttccatccatcaacctggt |
218 |
Q |
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| T |
19544717 |
tgatagtgctgcttcttactatgttatgacaagaattgctaccttggatcataaagatggtattcagaggactattattacttccatccatcaacctggt |
19544618 |
T |
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| Q |
219 |
accgaa-atttccaactttttcacaacctttg |
249 |
Q |
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|||||| ||| |||||||||||||||||||| |
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| T |
19544617 |
accgaagtttttcaactttttcacaacctttg |
19544586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 37321703 - 37321929
Alignment:
| Q |
21 |
aaaggcataagtggaggtcagaaaaggagagttagcatttgcattgagatccttacacgcccaaaacttctttttcttgatgaaccaaccagtggacttg |
120 |
Q |
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| T |
37321703 |
aaaggcataagtgggggtcaaaaaaggagagttagcatttgcattgagatcctaacacgtcctagacttctatttcttgatgagccaactagtggacttg |
37321802 |
T |
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| Q |
121 |
atagtgctgcttcttactatgttatgacaataattgctaccttggatcataaagatggcattcagaggactattattacttccatccatcaacctggtac |
220 |
Q |
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| T |
37321803 |
atagtgctgcttcttactatgttatgaaaagaattgctactttggatcataaagatggaattcggaggactattattacatccatccatcaacctagtac |
37321902 |
T |
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| Q |
221 |
cgaa-atttccaactttttcacaacct |
246 |
Q |
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| T |
37321903 |
tgaagtttttcaactttttcataacct |
37321929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 249
Target Start/End: Original strand, 37330625 - 37330854
Alignment:
| Q |
21 |
aaaggcataagtggaggtcagaaaaggagagttagcatttgcattgagatccttacacgcccaaaacttctttttcttgatgaaccaaccagtggacttg |
120 |
Q |
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| T |
37330625 |
aaaggcataagtgggggtcaaaaaaggagagttagcatttgcattgagatcctaacacgtcctagacttctttttcttgatgagccaactagtggacttg |
37330724 |
T |
|
| Q |
121 |
atagtgctgcttcttactatgttatgacaataattgctaccttggatcataaagatggcattcagaggactattattacttccatccatcaacctggtac |
220 |
Q |
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| T |
37330725 |
atagtgctgcttcttactatgttatgaaaagaattgcttccttggacaaaaaggatggaattcaaaggacaattattacatccatccatcaacctagtac |
37330824 |
T |
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| Q |
221 |
cgaa-atttccaactttttcacaacctttg |
249 |
Q |
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||| ||| ||||| ||||| |||||||| |
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| T |
37330825 |
tgaagtttttcaactctttcataacctttg |
37330854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 37346982 - 37346787
Alignment:
| Q |
19 |
ttaaaggcataagtggaggtcagaaaaggagagttagcatttgcattgagatccttacacgcccaaaacttctttttcttgatgaaccaaccagtggact |
118 |
Q |
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||||||| |||||||| ||||| ||||||||||||||||||| ||||||||| |||||||| |||| |||||| ||||||||||||||||| |||||||| |
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| T |
37346982 |
ttaaaggaataagtgggggtcaaaaaaggagagttagcatttccattgagattcttacacgtccaagacttctatttcttgatgaaccaactagtggact |
37346883 |
T |
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| Q |
119 |
tgatagtgctgcttcttactatgttatgacaataattgctaccttggatcataaagatggcattcagaggactattattacttccatccatcaacc |
214 |
Q |
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||||||||||||||||||||||||||||| || ||| ||| ||||||| | || ||||| ||||| ||||| ||| || | || ||||||||||| |
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| T |
37346882 |
tgatagtgctgcttcttactatgttatgaaaagaatagcttccttggacaaaaaggatggaattcaaaggaccattgttgcctcaatccatcaacc |
37346787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 37298331 - 37298434
Alignment:
| Q |
44 |
aaggagagttagcatttgcattgagatccttacacgcccaaaacttctttttcttgatgaaccaaccagtggacttgatagtgctgcttcttactatgtt |
143 |
Q |
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||||||| | ||||||||||||||||| || || | ||| | ||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||| |
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| T |
37298331 |
aaggagactaagcatttgcattgagattctaactcaccctagacttcttttccttgatgaaccaactagtggacttgatagtgcagcttcctactatgtt |
37298430 |
T |
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| Q |
144 |
atga |
147 |
Q |
| |
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|||| |
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| T |
37298431 |
atga |
37298434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 37291221 - 37291316
Alignment:
| Q |
52 |
ttagcatttgcattgagatccttacacgcccaaaacttctttttcttgatgaaccaaccagtggacttgatagtgctgcttcttactatgttatga |
147 |
Q |
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||||||||||||| ||||| || || ||||| | |||||| || ||||||||||| || || |||||||||||||| ||||| ||||||||||||| |
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| T |
37291221 |
ttagcatttgcatcgagattctaacgcgcccgagacttctcttccttgatgaaccgactagcggacttgatagtgcagcttcctactatgttatga |
37291316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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