View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19943_low_12 (Length: 215)
Name: NF19943_low_12
Description: NF19943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19943_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 38367178 - 38367266
Alignment:
| Q |
11 |
tagaggaggggcaactaagttgcaaatgaggaaattaaagagtgaaaatagagtggttaaaaagtgtacttaaatcccccaagtaggtt |
99 |
Q |
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| T |
38367178 |
tagaggaggggcaactaaattgcaaaggaggaaattaaagagtgaaaatagagtggttaaaaagtgtacttaaatcccccaagtaggtt |
38367266 |
T |
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Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 38367301 - 38367383
Alignment:
| Q |
129 |
ttaagtcaaaacaaaaccatgcatgcatgtttctcttttctctacattcactgtactcccaagatctgataatcaattttagtaaac |
215 |
Q |
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| T |
38367301 |
ttaagtcaaaacaaaaccatg----catgtttctcttttctctacattcactgtactcccaagatctgataatcaattttagtaaac |
38367383 |
T |
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