View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19943_low_2 (Length: 511)
Name: NF19943_low_2
Description: NF19943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19943_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 15 - 494
Target Start/End: Complemental strand, 6751189 - 6750710
Alignment:
| Q |
15 |
caaaggttagaaactttatttggcgagtagctcgaaattgcttgccaactcgtgtgaggcttaacgagaagtgtgttcaaattgaaacaatttgtccatg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
6751189 |
caaaggttagaaactttatttggcgagtagctcgaaattgcttgccaactcgtgtgaggcttagcgagaagggtgttcaaattggaacaatttgtccatg |
6751090 |
T |
|
| Q |
115 |
gtgtaacgttgtcccagaaacaacaacacatattctgatgcggtgtaacaaaagtagagaaacttgggtgaagttgaatttgattaattacatagaccag |
214 |
Q |
| |
|
||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6751089 |
gtgtaacattgtcccggaaacagcaacacatattctgatgcggtgtaacaaaagtagagaaacttgggtgaagttgaatttgattaattacatagaacag |
6750990 |
T |
|
| Q |
215 |
acccagcggcaacatggtagtattggaggtatgattttctacttattgaacttactatcaaagaacgataaatgtatttttgctatgaatatttggagtt |
314 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6750989 |
gcccagctgcaacatggtagtattggaggtatgattttctacttattgaacttactgtcaaagaaagataaatgtatttttgctatgaatatttggagtt |
6750890 |
T |
|
| Q |
315 |
tgtggaagagtagaaatgtatcaatttgggaccatcaaaatgaggggatgacagaaatcattcatagagggagttacatgttgacagaatggtagaatgc |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
6750889 |
tgtggaagagtagaaatgtatcaatttgggaccatcaaaatgaggggatggcagaaatcattcatagagggagttacatgttgacaaaatggcagaatgc |
6750790 |
T |
|
| Q |
415 |
acgtcaaattgaggagctgccctcgtcacggcaacaaactcatcaagatagggtgagatgacaatggccacccaatagct |
494 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6750789 |
acatcaaattgaggagctgccctcgtcacggcaacaaactcatcaagatagggtgagatggcaatggccacccaatagct |
6750710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 15 - 494
Target Start/End: Original strand, 6467340 - 6467820
Alignment:
| Q |
15 |
caaaggttagaaactttatttggcgagtagctcgaaattgcttgccaactcgtgtgaggcttaacgagaagtgtgttcaaattgaaacaatttgtccatg |
114 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
6467340 |
caaaggttagaaattttatttggcgagtagctcgaaattgcttgccaactcgtgtgaggcttagcgagaagggtgttcaaattggaacaatttgtccatg |
6467439 |
T |
|
| Q |
115 |
gtgtaacgttgtcccagaaacaacaacacatattctgatgcggtgtaacaaaagtagagaaacttgggtgaagttgaatttgattaattacatagaccag |
214 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6467440 |
gtgtaacgttgtcccggaaacaacaacacatattctgatgcggtgtaacaaaagtagagaaacttgggtgaagttgaatttgattaattacatagaccag |
6467539 |
T |
|
| Q |
215 |
acccagcggcaacatggtagtattggaggtatgattttctacttattgaacttactatcaaagaacgataaatgtatttttgctatgaatatttggagtt |
314 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
6467540 |
gcccagctgcaacatggtagtattggaggtatgattttctacttattgaacttactgtcgaagaaagataaatgtatttttgctatgaatatttagagtt |
6467639 |
T |
|
| Q |
315 |
tgtggaagagtagaaatgtatcaatttgggaccatcaaaatgaggggatgacagaaatcattcatagagggagttacatgttgacagaatggtagaatgc |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
6467640 |
tgtggaagagtagaaatgtatcaatttgggaccatcaaaatgaagggatggcagaaatcattcatagagggagttacatgttgacagaatggcaaaatgc |
6467739 |
T |
|
| Q |
415 |
acgtcaaattgaggagctgccctcgtcacggcaacaaac-tcatcaagatagggtgagatgacaatggccacccaatagct |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| ||||||| |
|
|
| T |
6467740 |
acgtcaaattgaggagctgccctcgtcacggcaacaaacttcatcaagataggatgagatggcaatggccacctaatagct |
6467820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 386 - 494
Target Start/End: Original strand, 6470412 - 6470520
Alignment:
| Q |
386 |
agttacatgttgacagaatggtagaatgcacgtcaaattgaggagctgccctcgtcacggcaacaaactcatcaagatagggtgagatgacaatggccac |
485 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
6470412 |
agttacatgttgacagaatggcagaatgtacgtcaaattgaggagctgccctcgtcatggcaacaaactcatcaagataggatgagatggcaatggccac |
6470511 |
T |
|
| Q |
486 |
ccaatagct |
494 |
Q |
| |
|
| ||||||| |
|
|
| T |
6470512 |
ctaatagct |
6470520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 421 - 494
Target Start/End: Original strand, 28694745 - 28694818
Alignment:
| Q |
421 |
aattgaggagctgccctcgtcacggcaacaaactcatcaagatagggtgagatgacaatggccacccaatagct |
494 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
28694745 |
aattgaggagctgcccttgtcacggcaacaaactcatcaagatagggtgagatggcaacggccacccaatagct |
28694818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 80 - 491
Target Start/End: Complemental strand, 8747326 - 8746915
Alignment:
| Q |
80 |
gagaagtgtgttcaaattgaaacaatttgtccatggtgtaacgttgtcccagaaacaacaacacatattctgatgcggtgtaacaaaagtagagaaactt |
179 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8747326 |
gagaagggtgttcaaattggaacaatttgtccatggtgtaatgttgtcccggaaacagcaacacatattctgatgcagtgtaacaaaagtagagaaactt |
8747227 |
T |
|
| Q |
180 |
gggtgaagttgaatttgattaattacatagaccagacccagcggcaacatggtagtattggaggtatgattttctacttattgaacttactatcaaagaa |
279 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| |||||| |||||||||| ||||| |||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
8747226 |
gggtgaagttggatctgattaattacatagaccaggcccagctacaacatggtaatattgaaggtatgattttctacttattgaacttaatttcaaagaa |
8747127 |
T |
|
| Q |
280 |
cgataaatgtatttttgctatgaatatttggagtttgtggaagagtagaaatgtatcaatttgggaccatcaaaatgaggggatgacagaaatcattcat |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
8747126 |
agataaatgtatttttgctatgaatatttggagcttgtggaagagtagaaatgtatcaatttgggaccatcaaaatgaggggatggcagaaatttatcat |
8747027 |
T |
|
| Q |
380 |
agagggagttacatgttgacagaatggtagaatgcacgtcaaattgaggagctgccctcgtcacggcaacaaactcatcaagatagggtgagatgacaat |
479 |
Q |
| |
|
| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
8747026 |
acagggagttacaagttgacagaatggtggaatgcacgtcaaattgaggagctgccctcgtcacgacaacaaactcatccagatagggtgaaatggcaat |
8746927 |
T |
|
| Q |
480 |
ggccacccaata |
491 |
Q |
| |
|
| ||| |||||| |
|
|
| T |
8746926 |
gaccatccaata |
8746915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 494
Target Start/End: Complemental strand, 6955907 - 6955446
Alignment:
| Q |
15 |
caaaggttagaaactttatttggcgagtagctcgaaattgcttgccaactcgtgtgaggcttaacgagaagtgtgttcaaattgaaacaatttgtccatg |
114 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| ||||||| || ||||||||| |||||| ||||| |
|
|
| T |
6955907 |
caaaggttagaaactttgtttggtgagtagctcgaaattgcttgccaactcacgtgaggcttagcgagaagggtattcaaattggaacaatctgtcc--- |
6955811 |
T |
|
| Q |
115 |
gtgtaacgttgtcccagaaacaacaacacatattctgatgcggtgtaacaaaagtagagaaacttgggtgaagttgaatttgattaattacatagaccag |
214 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| || |||||||||||||||||||| |
|
|
| T |
6955810 |
--------------cggaaacaacaacacatattctgatgcagtgtaacaaaagtagagaatgttgggtgaagttggatctgattaattacatagaccag |
6955725 |
T |
|
| Q |
215 |
acccagcggcaacatggtagtattggaggtatgattttctacttattgaacttactatcaaagaacgataaatgtatttttgctatgaatatttggagtt |
314 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||| ||||||| | |||||||| ||||||| |||||||||||||||||||||||| | |
|
|
| T |
6955724 |
gcccagccacaacatggtaatattggaggtatgattttctacttat-gaacttaatgtcaaagaaagataaatatatttttgctatgaatatttggagct |
6955626 |
T |
|
| Q |
315 |
tgtggaagagtagaaatgtatcaatttgggaccatcaaaatgaggggatgacagaaatcattcatagagggagttacatgttgacagaatggtagaatgc |
414 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6955625 |
tgtggaagaggagaaatgtatcaatttgggaccatcaaaatgaggggatggcagaaattattcatagagggagttacatgttgacagaatggcggaatgc |
6955526 |
T |
|
| Q |
415 |
acgtcaaattgaggagctgccctcgtcacggcaacaaactcatcaagatagggtgagatgacaatggccacccaatagct |
494 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| ||| ||| | ||||||||||||| |
|
|
| T |
6955525 |
acgtcaaattgaggagctgccgtcgtcacgacaacaaactcatcctgatagggtgaaatggcaacgaccacccaatagct |
6955446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 412 - 494
Target Start/End: Complemental strand, 34119033 - 34118952
Alignment:
| Q |
412 |
tgcacgtcaaattgaggagctgccctcgtcacggcaacaaactcatcaagatagggtgagatgacaatggccacccaatagct |
494 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
34119033 |
tgcacgtcaaat-gaggagctgccctcgtcatggcaacaaactcatcaagatagggtgagatggcaacaaccacccaatagct |
34118952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 22009358 - 22009118
Alignment:
| Q |
15 |
caaaggttagaaactttatttggcgagtagctcgaaattgcttgccaactcgtgtgaggcttaacgagaagtgtgttcaaattgaaacaatttgtccatg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||| |||||| |||||||| |
|
|
| T |
22009358 |
caaaggttagaaactttatttggcgagtagctcaaaattgctttccaactcgtgtgaggcttagcgagaagggtgttcaaattggaacaatctgtccatg |
22009259 |
T |
|
| Q |
115 |
gtgtaacgttgtcccagaaacaacaacacatattctgatgcggtgtaacaaaagtagagaaacttgggtgaagttgaatttgattaattacatagaccag |
214 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
22009258 |
gtgtaatgttgtcccgaaaacagcaacacatattctgatgtagtgtaacaaaagtagagaaacttgggtgaaattgaatctgattagttacatagaccag |
22009159 |
T |
|
| Q |
215 |
acccagcggcaacatggtagtattggaggtatgattttcta |
255 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
22009158 |
gcccagctgcaacatggtagtattggaggtgtgattttcta |
22009118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 374 - 492
Target Start/End: Complemental strand, 22009096 - 22008978
Alignment:
| Q |
374 |
attcatagagggagttacatgttgacagaatggtagaatgcacgtcaaattgaggagctgccctcgtcacggcaacaaactcatcaagatagggtgagat |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
22009096 |
attcatagagggagttacatgttgacagaatggcggaatgcacgtcaaattgaggagttgccttcgtcacggcaacaaactcatcaagatagggtgtgat |
22008997 |
T |
|
| Q |
474 |
gacaatggccacccaatag |
492 |
Q |
| |
|
| ||| ||||||||||||| |
|
|
| T |
22008996 |
ggcaacggccacccaatag |
22008978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 124 - 385
Target Start/End: Complemental strand, 21271068 - 21270808
Alignment:
| Q |
124 |
tgtcccagaaacaacaacacatattctgatgcggtgtaacaaaagtagagaaacttgggtgaagttgaatttgattaattacatagaccagacccagcgg |
223 |
Q |
| |
|
|||||| |||||| | ||||||||||||||| || |||||||||||| |||||| ||||| | ||| ||||| ||| |||| ||||| || ||| | |
|
|
| T |
21271068 |
tgtcccggaaacagcggcacatattctgatgcaatgcaacaaaagtagattaacttgagtgaaacttaatctgattcattgcatacaccaggcctagctg |
21270969 |
T |
|
| Q |
224 |
caacatggtagtattggaggtatgattttctacttattgaacttactatcaaagaacgataaatgtatttttgctatgaatatttggagtttgtggaaga |
323 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||||| ||| || | |||||||| ||||| | ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
21270968 |
caacatgatagtatttgaagtatgattttctacttatggaatatattgtcaaagaaagataa-tatatgtttgctatgaatatttggaacttgtggaaga |
21270870 |
T |
|
| Q |
324 |
gtagaaatgtatcaatttgggaccatcaaaatgaggggatgacagaaatcattcatagaggg |
385 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
21270869 |
gtagaaatgcatcaatttgggaccatcaaaatgaggggattgcagaaattattcatagaggg |
21270808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 15 - 173
Target Start/End: Complemental strand, 19100943 - 19100785
Alignment:
| Q |
15 |
caaaggttagaaactttatttggcgagtagctcgaaattgcttgccaactcgtgtgaggcttaacgagaagtgtgttcaaattgaaacaatttgtccatg |
114 |
Q |
| |
|
||||||||| ||||||||||||| || ||||||||||| ||||||||||||||||| |||||| | ||| |||||||||||| |||||| || | ||| |
|
|
| T |
19100943 |
caaaggttaaaaactttatttggtgaatagctcgaaatcgcttgccaactcgtgtgtggcttagcaggaacggtgttcaaattggaacaatctgacaatg |
19100844 |
T |
|
| Q |
115 |
gtgtaacgttgtcccagaaacaacaacacatattctgatgcggtgtaacaaaagtagag |
173 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19100843 |
gtgtaatgttgtcccggaaacaacaacacatattctgatgcagtgtaacaaaagtagag |
19100785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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