View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19943_low_3 (Length: 501)
Name: NF19943_low_3
Description: NF19943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19943_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 487
Target Start/End: Complemental strand, 955892 - 955421
Alignment:
| Q |
13 |
aagggagaatgcagtcagaatggtagaaatgtttgcatggtaactctctcacttccacatcaacctcaaactcatctttgcatattggacaattcggatc |
112 |
Q |
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| T |
955892 |
aagggagaatgcagtcagaatggtagaaatgtttgcatggtaactctctcacttgcacatcaacctcaaactcatctttgcatattggacaattcggatc |
955793 |
T |
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| Q |
113 |
acttgctaaatgtgtttctgttaccttaaccattggcaaggcttcaatggccgaaggtgacgctggaggcggccccggtctaatgttgttgtgaatcaca |
212 |
Q |
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| T |
955792 |
acttgctaaatgtgtttctgttaccttaaccattggcaaggcttcaatggccgaaggtgacgctggaggcggccccggtctaatgttgttgtgaatcaca |
955693 |
T |
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| Q |
213 |
ccatcaaagaactcgtctaatgacggggtttcaatgtcactgagttgaggagccatgttttnnnnnnnnnnnnnnnnnncaataggccttgttggacgag |
312 |
Q |
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| T |
955692 |
ccatcaaagaactcgtctaatgacggggtttcaatgtcattgagttgaggagccatgtttt---gtggtggtggtggtgcaataggccttgttggacgag |
955596 |
T |
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| Q |
313 |
ttggtcgtacaaatcttagtgtaatccatgcttgtggattttgattttggtcatcttcatgttctgttccccattgtggtgttgtgttgttttggtcttg |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
955595 |
ttggtcgtacaaatcttagtgtaatccatgcttgtggattttgattttgatcatcttcatgttctgttccccattgtggtgttgtgttgttttggtcttg |
955496 |
T |
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| Q |
413 |
tcttctaagagacggatcaaggatgaaagctaagctacccattaactgattagtagaaggtggagggtcaatatt |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
955495 |
tcttctaagagacggatcaaggatgaaagctaagctacccattaactgattagtagaaggaggagggtcaatatt |
955421 |
T |
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