View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19943_low_4 (Length: 432)
Name: NF19943_low_4
Description: NF19943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19943_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 47645759 - 47645338
Alignment:
| Q |
1 |
ttcaatattgaagtatgagtcaccccaccaatcttaataactttcaagtactgannnnnnncatctttccatagagattcaattgccaacaagctcacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | |
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| T |
47645759 |
ttcaatattgaagtatgagtcaccccaccaatcttaataactttcaagtactgatttttttcatctttccatagagattcaagtgccaacaagctcacca |
47645660 |
T |
|
| Q |
101 |
tgttcacagttccgtcaccatcaccatacgaaaactctgggggctcatcaaaatcaccattcctgtaaaacaattcctctggagtcttcacaccctttcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47645659 |
tgttcacagttccgtcaccatcaccatacgaaaactccgggggctcatcaaaatcgccattcctgtaaaacaattcctctggagtcttcacaccctttcc |
47645560 |
T |
|
| Q |
201 |
tataatacaagtcatagccacttctggtgcatctattttcgctatcaaaggtaaaatgcgagtttcataaggataaaccccttcaggaaaaccaatatct |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47645559 |
tataatacaagtcatagccactgctggtgcatctattttcgctatcaaaggtaaaatgcgagtttcataaggataaaccccttcaggaaaaccaatatct |
47645460 |
T |
|
| Q |
301 |
ttaagaaaatcaaccatatcatgtgctgaatagtttctatatggagtagtaactaaagatttatcaatatcaaacatcttaggatttggcaaaagccata |
400 |
Q |
| |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47645459 |
ttaagaaaatcaatcatatcatgtgctgagtagtttctatatggagtagtaactaaagatttatcaatatcaaacatcttaggatttggcaaaagccata |
47645360 |
T |
|
| Q |
401 |
ggttactctcagaagttctctg |
422 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
47645359 |
ggttactctcagaagttctctg |
47645338 |
T |
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