View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19943_low_5 (Length: 376)
Name: NF19943_low_5
Description: NF19943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19943_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 24566485 - 24566246
Alignment:
| Q |
16 |
tttataatcaatataattgacatgttcaattaacccactcgagcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaa |
115 |
Q |
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| T |
24566485 |
tttataatcaatataattgacatgttcaattaacccactcgagcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaa |
24566386 |
T |
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| Q |
116 |
aattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatagtctttcttatcaagc |
215 |
Q |
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| T |
24566385 |
aattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatagtctttcttatcaagc |
24566286 |
T |
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| Q |
216 |
atgtatcacgagtgtagaagactatactgatcattgggtt |
255 |
Q |
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| T |
24566285 |
atgtatcacgagtgtagaagactatactgatcattgggtt |
24566246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 268 - 342
Target Start/End: Complemental strand, 24565336 - 24565262
Alignment:
| Q |
268 |
cttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattat |
342 |
Q |
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| T |
24565336 |
cttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattat |
24565262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 78 - 333
Target Start/End: Original strand, 45532545 - 45532795
Alignment:
| Q |
78 |
cttctgcataatatgtggattggatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgat |
177 |
Q |
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| T |
45532545 |
cttctgcataatatgtggattggatatgtattttaaaaaattatttataatttgagaatgagaaaggtaaacaattgaactaaaaaagtttctctgtgat |
45532644 |
T |
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| Q |
178 |
taaatgtttctttcatgca--atagtctttcttatcaagcatgtatcacgagtgtagaagactatactgatcattgggttataatatgaccacttataat |
275 |
Q |
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| T |
45532645 |
gaaatgcttctttcatgtattagagactttcatatcaagcatgtatcacgaatgtagaa----atactcatcattgggttataatatgaccaattataat |
45532740 |
T |
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| Q |
276 |
tcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagattt |
333 |
Q |
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| T |
45532741 |
tcaaaat---aaaaaatttgaagtttttattcttaaagatattacattttaaagattt |
45532795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 44339720 - 44339384
Alignment:
| Q |
16 |
tttataatcaatataattgacatgttcaattaacccactcgagcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaa |
115 |
Q |
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|||| ||||||||||| | | || ||||||||| ||||| |||||| ||||| || ||||||| ||| ||||||| || ||||| |||||||||| |
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| T |
44339720 |
tttaaaatcaatataaataatatattcaattaaatcactccagcaccaacattttatgctgtcttctacatgatatgtgaatcagatggatatttgcaaa |
44339621 |
T |
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| Q |
116 |
aattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatag----tctttcttatc |
211 |
Q |
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|| || || ||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |||| |||| |
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| T |
44339620 |
aactacttacagtttgagaataagaaagataaacaattgtactaaaaaagcttctttgtgattaaatgcttctttcatgcaatagagacactttgatatc |
44339521 |
T |
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| Q |
212 |
aagc--atgtatcacgagtgtag-------aagactatactgatcattgggttataatatgaccacttataattcaaaatagaaaaatattataagtttt |
302 |
Q |
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|| | || |||||||||| ||| ||||||| ||| ||||||| ||||||||||||||| |||||||||||| || ||| |||| |||||| |
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| T |
44339520 |
aaacatatatatcacgagtttagaagactcaagactacactcatcattgagttataatatgaccaattataattcaaagtataaa---attagcagtttt |
44339424 |
T |
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| Q |
303 |
tattcttcaagatattacttttttaagatttgacaattat |
342 |
Q |
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| T |
44339423 |
tattcttcatgatatttctttttttagatttgacaattat |
44339384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 44335247 - 44335431
Alignment:
| Q |
16 |
tttataatcaatataattgacatgttcaattaacccactcgagcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaa |
115 |
Q |
| |
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|||| ||||||||||| | | || ||||||||| ||||| |||||||||||| || ||||| ||||| ||||||| || |||| |||||||||| |
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| T |
44335247 |
tttaaaatcaatataaataatatattcaattaaatcactccagcacctacattttatgatgtcttatgcatgatatgtgaatcagatgaatatttgcaaa |
44335346 |
T |
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| Q |
116 |
aattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatag |
200 |
Q |
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| T |
44335347 |
aactacttacagtttgagaataagaaagataaacaattgtactaaaaaagcttctttgtgattaaatgcttctttcatgcaatag |
44335431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 342
Target Start/End: Original strand, 44335504 - 44335590
Alignment:
| Q |
253 |
gttataatatgaccacttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattat |
342 |
Q |
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| T |
44335504 |
gttataatattaccagttataattcaaagtataaaa---ttagcagtttttattcttcatgatatttctttttttagatttgacaattat |
44335590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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