View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19944_high_2 (Length: 451)
Name: NF19944_high_2
Description: NF19944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19944_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 3 - 435
Target Start/End: Complemental strand, 37499837 - 37499405
Alignment:
| Q |
3 |
agatgaaactgagatggcaaagagaacactcttgctcaaattatgagatgtagtgaaatctgtcacgaacataattgtaacaactactagcataacggaa |
102 |
Q |
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| T |
37499837 |
agatgaaactgagatggcaaagagaacactcttgctcaaattatgagatgtagtgaaatctgtcacgaacataattgtaacaactactagcataacggaa |
37499738 |
T |
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| Q |
103 |
ataagcatgtaaaatatccatctgagacacttttcaaagtcgtctggcggttttttcttcccaatttttgaaaacatggtgctcatgtaagtatttgatc |
202 |
Q |
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| T |
37499737 |
ataagcatgtaaaatatccatctgagacacttttcaaagtcgtctggcggttttttcttcccaatttttgaaaacatggtgctcatgtaagtatttgatc |
37499638 |
T |
|
| Q |
203 |
cagttgaaataactaaacctgttcctgtacctgataccacatttgtgccctgtaacgttcgtaattagtctcttaagataaattctgttattaagctgga |
302 |
Q |
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| T |
37499637 |
cagttgaaataactaaacctgttcccgtacctgataccacatttgtgccctgtaacgttcgtaattagtctcttaagataaattctgttattaagctgga |
37499538 |
T |
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| Q |
303 |
aattctgtttggaaattcaatacttttgaaggccaaatatctgaaagatatagcaagttacaaaactctgaaataaaaaacaaatgatttgagatatgga |
402 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37499537 |
aattctgtttggaaattcaataattttgaaggccaaatatctgaaatatatagcaagttacaaaactctgaaataaaaaacaaatgatttgagatatgga |
37499438 |
T |
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| Q |
403 |
tttgcatctttgtgaattaagtatagcaatatt |
435 |
Q |
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| T |
37499437 |
tttgcatcttcgtgaattaagtatagcaatatt |
37499405 |
T |
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