View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19944_high_3 (Length: 447)

Name: NF19944_high_3
Description: NF19944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19944_high_3
NF19944_high_3
[»] chr7 (10 HSPs)
chr7 (249-447)||(31594689-31594887)
chr7 (93-192)||(31594533-31594632)
chr7 (311-447)||(31617964-31618100)
chr7 (336-447)||(31585126-31585237)
chr7 (336-447)||(31607976-31608087)
chr7 (353-447)||(31575733-31575827)
chr7 (304-447)||(31614228-31614371)
chr7 (336-447)||(31604385-31604496)
chr7 (367-443)||(31532146-31532222)
chr7 (371-443)||(31540776-31540848)
[»] chr1 (1 HSPs)
chr1 (312-447)||(52174709-52174844)


Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 249 - 447
Target Start/End: Original strand, 31594689 - 31594887
Alignment:
Q  249 taagagttttggaggaccatggcctctgttggtccctcttctagttctgtttctgctgttattgaattcgtctcttgccaatctgaagaagacatatttg 348  Q
    ||||||||| |||||||| ||| |||| ||||| |||||||||||||||| |||| ||| |||||||| ||||||||||||||||| |||||||||||||    
T  31594689 taagagtttgggaggaccgtggtctctattggttcctcttctagttctgtctctgttgtaattgaatttgtctcttgccaatctgatgaagacatatttg 31594788  T
Q  349 acagttgtagtggtggccttttaggagaaaataagacaggttttggaggaaatgtaaccgatgaaagtggtccttgtagcatttcaattactttattca 447  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  31594789 agagttgtagtggtggccttttaggagaaaataagacaggttttggaggaaatgtgaccgatgaaagcggtccttgtagcatttcaattactttattca 31594887  T

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Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 93 - 192
Target Start/End: Original strand, 31594533 - 31594632
Alignment:
Q  93 aagtgtttaacggctttaaaagtagaaatttagtgtctaaggcctaatatagtaacttaaaaatgctcattatacaatttcatacaatgctcattcacac 192  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31594533 aagtgtttgacggctttagaagtagaaatttagtgtctaaggcctaatatagtaacttaaaaatgctcattatacaatttcatataatgctcattcacac 31594632  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 447
Target Start/End: Original strand, 31617964 - 31618100
Alignment:
Q  311 tgaattcgtctcttgccaatctgaagaagacatatttgacagttgtagtggtggccttttaggagaaaataagacaggttttggaggaaatgtaaccgat 410  Q
    |||||| ||||| | | |||| || |||||||||| ||||| |||||||  ||||||||  || ||| |||||||||| ||||||||| |||  ||||||    
T  31617964 tgaatttgtctcgtacaaatcggatgaagacatatctgacacttgtagttctggcctttcgggtgaatataagacaggctttggaggatatgataccgat 31618063  T
Q  411 gaaagtggtccttgtagcatttcaattactttattca 447  Q
    |||||||||||||| | |||||| |||||||||||||    
T  31618064 gaaagtggtccttgcaacatttctattactttattca 31618100  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 447
Target Start/End: Original strand, 31585126 - 31585237
Alignment:
Q  336 gaagacatatttgacagttgtagtggtggccttttaggagaaaataagacaggttttggaggaaatgtaaccgatgaaagtggtccttgtagcatttcaa 435  Q
    ||||| |||| ||||| ||||| ||||||||||| | ||||||||||||| || ||||||||| |||  || ||||||||||||||||| | |||||| |    
T  31585126 gaagatatatgtgacatttgtactggtggcctttcaagagaaaataagacgggctttggaggatatggcactgatgaaagtggtccttgcaacatttcta 31585225  T
Q  436 ttactttattca 447  Q
    ||||||||||||    
T  31585226 ttactttattca 31585237  T

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Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 447
Target Start/End: Original strand, 31607976 - 31608087
Alignment:
Q  336 gaagacatatttgacagttgtagtggtggccttttaggagaaaataagacaggttttggaggaaatgtaaccgatgaaagtggtccttgtagcatttcaa 435  Q
    |||||||||| ||||| |||||||||||||||||  |||||||||||||| || ||||||||| |||  || ||||| || |||||||| | |||||| |    
T  31607976 gaagacatatatgacaattgtagtggtggcctttccggagaaaataagaccggctttggaggatatgacactgatgacagcggtccttgcaacatttcta 31608075  T
Q  436 ttactttattca 447  Q
    ||||||||||||    
T  31608076 ttactttattca 31608087  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 353 - 447
Target Start/End: Original strand, 31575733 - 31575827
Alignment:
Q  353 ttgtagtggtggccttttaggagaaaataagacaggttttggaggaaatgtaaccgatgaaagtggtccttgtagcatttcaattactttattca 447  Q
    |||||| |||| ||||| |||||||||||||||||| ||||||||| |||  ||||| |||||||||||||| | |||||| |||||||||||||    
T  31575733 ttgtagcggtgtcctttcaggagaaaataagacaggctttggaggatatgacaccgaggaaagtggtccttgcaacatttctattactttattca 31575827  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 304 - 447
Target Start/End: Original strand, 31614228 - 31614371
Alignment:
Q  304 ctgttattgaattcgtctcttgccaatctgaagaagacatatttgacagttgtagtggtggccttttaggagaaaataagacaggttttggaggaaatgt 403  Q
    |||| |||||||| ||||| | | |||| || ||||| |||| | ||| |||||||||||||||||  || |||  |||||  || ||||||||| |||     
T  31614228 ctgtaattgaatttgtctcgtacaaatcggatgaagaaatatctaacacttgtagtggtggcctttatggtgaatgtaagaagggatttggaggatatga 31614327  T
Q  404 aaccgatgaaagtggtccttgtagcatttcaattactttattca 447  Q
     |||||||||||||||||||| | |||||| |||||||||||||    
T  31614328 caccgatgaaagtggtccttgcaacatttctattactttattca 31614371  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 447
Target Start/End: Original strand, 31604385 - 31604496
Alignment:
Q  336 gaagacatatttgacagttgtagtggtggccttttaggagaaaataagacaggttttggaggaaatgtaaccgatgaaagtggtccttgtagcatttcaa 435  Q
    |||||||| | ||||| ||||| | ||||||||| ||| ||| ||||||| || ||||||||| |||  |  | ||||||||||||||| | |||||| |    
T  31604385 gaagacatgtctgacacttgtaattgtggcctttcaggtgaatataagacgggctttggaggatatgatattgttgaaagtggtccttgcaacatttcta 31604484  T
Q  436 ttactttattca 447  Q
    ||||||||||||    
T  31604485 ttactttattca 31604496  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 443
Target Start/End: Original strand, 31532146 - 31532222
Alignment:
Q  367 ttttaggagaaaataagacaggttttggaggaaatgtaaccgatgaaagtggtccttgtagcatttcaattacttta 443  Q
    ||||||||||| |||||| ||| ||||||||| |||  || ||   |||||||||||||||||||||  ||||||||    
T  31532146 ttttaggagaatataagaaaggctttggaggatatggcactgactgaagtggtccttgtagcatttctgttacttta 31532222  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 443
Target Start/End: Original strand, 31540776 - 31540848
Alignment:
Q  371 aggagaaaataagacaggttttggaggaaatgtaaccgatgaaagtggtccttgtagcatttcaattacttta 443  Q
    ||||||| |||||| ||| ||||||||| |||  |||||   ||||||||||||||||||||| | |||||||    
T  31540776 aggagaatataagaaaggctttggaggatatggcaccgactgaagtggtccttgtagcatttctaatacttta 31540848  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 447
Target Start/End: Complemental strand, 52174844 - 52174709
Alignment:
Q  312 gaattcgtctcttgccaatctgaagaagacatatttgacagttgtagtggtggccttttaggagaaaataagacaggttttggaggaaatgtaaccgatg 411  Q
    ||||||||||| | | |||  || |||||||| | ||||| || |||||||||| ||| |||| || ||||||| || ||||||||| |||  || ||||    
T  52174844 gaattcgtctcatccaaattggatgaagacatgtctgacatttctagtggtggcgtttcaggataacataagacgggctttggaggatatggcactgatg 52174745  T
Q  412 aaagtggtccttgtagcatttcaattactttattca 447  Q
    ||||||| ||||  | |||||| |||||||||||||    
T  52174744 aaagtggcccttccaacatttctattactttattca 52174709  T

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