View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19944_high_4 (Length: 444)

Name: NF19944_high_4
Description: NF19944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19944_high_4
NF19944_high_4
[»] chr5 (5 HSPs)
chr5 (101-429)||(19842269-19842597)
chr5 (20-78)||(31958471-31958529)
chr5 (24-78)||(10042724-10042778)
chr5 (24-80)||(19783636-19783691)
chr5 (24-64)||(39782889-39782929)
[»] chr7 (1 HSPs)
chr7 (15-80)||(38049314-38049379)
[»] chr4 (2 HSPs)
chr4 (32-78)||(19124625-19124670)
chr4 (24-66)||(32200816-32200858)
[»] chr8 (1 HSPs)
chr8 (22-78)||(6438999-6439054)


Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 101 - 429
Target Start/End: Complemental strand, 19842597 - 19842269
Alignment:
Q  101 gttaattaatttccattgcttaaactaatctcaattattctgattaagaaatcaaataaatagttgagaccactactaagtagaatcttagattgattaa 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19842597 gttaattaatttccgttgcttaaactaatctcaattattctgattaagaaatcgaataaatagttgagaccactactaagtagaatcttagattgattaa 19842498  T
Q  201 ttgttgtggtcaatnnnnnnncctactactcaagtcttttcgatagtattagaattagaaccgatcttctcaattgatatgcaaacactttttcttaaat 300  Q
    ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19842497 ttgttgtggtcaataaaaaaacctactactcaagtcttttcgatagtattagaattagaaccgatcttctcaattgatatgcaaacactttttcttaaat 19842398  T
Q  301 atcaacttaattagtcttaattaatcaatccaacaggaaactcgtcatctttttagtgtgtttgtatgcaatctagctaagatcttacaaacaaaagatt 400  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19842397 atcaacttaattagtcttaattaatcaatccaacgggaaactcgtcatctttttagtgtgtttgtatgcaatctagctaagatcttacaaacaaaagatt 19842298  T
Q  401 cctagttagtgactagatttatgaagaaa 429  Q
    |||||||||||||||||||||||||||||    
T  19842297 cctagttagtgactagatttatgaagaaa 19842269  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 31958529 - 31958471
Alignment:
Q  20 tgaacttatcttagttgataaagataatacataaatctatgcaaggtctgaggttcgaa 78  Q
    |||||||||||  |||||||||||||| |||||||| ||||||||||| | ||||||||    
T  31958529 tgaacttatctcggttgataaagataacacataaatatatgcaaggtccggggttcgaa 31958471  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 10042724 - 10042778
Alignment:
Q  24 cttatcttagttgataaagataatacataaatctatgcaaggtctgaggttcgaa 78  Q
    ||||||| |||||||| ||||||| ||||||| |||||||||||  |||||||||    
T  10042724 cttatctaagttgatatagataatgcataaatatatgcaaggtcgcaggttcgaa 10042778  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 19783691 - 19783636
Alignment:
Q  24 cttatcttagttgataaagataatacataaatctatgcaaggtctgaggttcgaatc 80  Q
    |||| ||||||||||||||| ||||||| ||| ||||||||||| || |||||||||    
T  19783691 cttaacttagttgataaagacaatacat-aatatatgcaaggtccgatgttcgaatc 19783636  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 39782889 - 39782929
Alignment:
Q  24 cttatcttagttgataaagataatacataaatctatgcaag 64  Q
    ||||||| ||||||||||||||| |||||||| ||||||||    
T  39782889 cttatctcagttgataaagataacacataaatatatgcaag 39782929  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 38049379 - 38049314
Alignment:
Q  15 agttttgaacttatcttagttgataaagataatacataaatctatgcaaggtctgaggttcgaatc 80  Q
    |||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  38049379 agttttgagcttatcttagttgataaagataatatataaatatatgcaaggtctgaggttcgaatc 38049314  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 19124670 - 19124625
Alignment:
Q  32 agttgataaagataatacataaatctatgcaaggtctgaggttcgaa 78  Q
    |||||||||||| ||||||||| | ||||||||||||||||||||||    
T  19124670 agttgataaagacaatacataa-tatatgcaaggtctgaggttcgaa 19124625  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 32200858 - 32200816
Alignment:
Q  24 cttatcttagttgataaagataatacataaatctatgcaaggt 66  Q
    ||||||| ||||||||||||||| |||||||| ||||||||||    
T  32200858 cttatctcagttgataaagataacacataaatatatgcaaggt 32200816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 6438999 - 6439054
Alignment:
Q  22 aacttatcttagttgataaagataatacataaatctatgcaaggtctgaggttcgaa 78  Q
    ||||||||| | |||||||||||||||||| ||| |||| |||||||| ||||||||    
T  6438999 aacttatctcaattgataaagataatacat-aatatatgtaaggtctggggttcgaa 6439054  T

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