View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19944_low_10 (Length: 234)

Name: NF19944_low_10
Description: NF19944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19944_low_10
NF19944_low_10
[»] chr1 (21 HSPs)
chr1 (1-217)||(35276492-35276707)
chr1 (1-213)||(35262967-35263184)
chr1 (1-206)||(35270397-35270609)
chr1 (1-212)||(35190329-35190536)
chr1 (1-206)||(35147327-35147528)
chr1 (1-175)||(35199926-35200105)
chr1 (1-162)||(35224920-35225086)
chr1 (1-72)||(35295851-35295921)
chr1 (1-69)||(34309455-34309522)
chr1 (8-68)||(35212073-35212132)
chr1 (1-72)||(35248373-35248443)
chr1 (128-213)||(35248226-35248311)
chr1 (1-69)||(35189417-35189484)
chr1 (8-52)||(35476424-35476468)
chr1 (1-72)||(8639004-8639074)
chr1 (9-52)||(35205031-35205074)
chr1 (18-69)||(35208239-35208289)
chr1 (9-52)||(45525586-45525629)
chr1 (17-66)||(35194602-35194650)
chr1 (7-72)||(35219167-35219231)
chr1 (20-73)||(35252178-35252230)
[»] chr2 (2 HSPs)
chr2 (1-52)||(33138614-33138665)
chr2 (1-48)||(18558746-18558792)
[»] chr3 (5 HSPs)
chr3 (2-52)||(23331914-23331964)
chr3 (1-52)||(17664562-17664613)
chr3 (1-52)||(19246965-19247016)
chr3 (19-69)||(899766-899815)
chr3 (14-54)||(53924271-53924311)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 35276707 - 35276492
Alignment:
Q  1 gattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatggggggagttcttcaattcaggcaaatgtgaagaagttcagatgaatgtga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35276707 gattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatggggg-agttcttcaattcaggcaaatgtgaagaagttcagatgaatgtga 35276609  T
Q  101 tggagataaagggtggttggaagagtggtctctttcttgaagggatataaattaggcctaagtaacacaattaagcagaattcactgagctatgcaacgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35276608 tggagataaagggtggttggaagagtggtctctttcttgaagggatataaattaggcctaagtaacaccattaagcagaattcactgagctatgcaacgg 35276509  T
Q  201 gtcttgtgtcttgaatg 217  Q
    |||||||||||||||||    
T  35276508 gtcttgtgtcttgaatg 35276492  T

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Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 35263184 - 35262967
Alignment:
Q  1 gattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatggggggagttcttcaattcaggca---aatgtgaagaagttcagatgaatg 97  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||   ||  ||||||||| |||||||||     
T  35263184 gattgcaacgtcctagtgtgagaagcgatgggtggttggagattgagatggggg-agttcttcagttcaggcatagaaaatgaagaagtccagatgaatt 35263086  T
Q  98 tgatggagataaagggtggt---tggaagagtggtctctttcttgaagggatataaattaggcctaagtaacacaattaagcagaattcactgagctatg 194  Q
    || | |||||||||| ||||   |||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| ||| |||   |||||    
T  35263085 tgttagagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaagcagcatttactatactatg 35262986  T
Q  195 caacgggtcttgtgtcttg 213  Q
    ||| |||||||||||||||    
T  35262985 caaggggtcttgtgtcttg 35262967  T

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Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 35270609 - 35270397
Alignment:
Q  1 gattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatggggggagttcttcaattcaggca---aatgtgaagaagttcagatgaatg 97  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||   ||  ||||||||| ||||||||||    
T  35270609 gattgcaacgtcctagtgtgagaagtgatgggtggttggagattgagatg-ggggagttcttcaattcaggcatagaaaatgaagaagtccagatgaatg 35270511  T
Q  98 tgatggagataaagggtgg---ttggaagagtggtctctttcttgaagggatataaattaggcctaag--taacacaattaagcagaattcactgagcta 192  Q
    ||||  ||| |||||||||   ||||||||| |||||  |||||||||| ||| || |||||||||||  |||||||||||| ||  ||||||||| |||    
T  35270510 tgatacagacaaagggtggtaattggaagagaggtctagttcttgaaggaatagaagttaggcctaagtataacacaattaaccaacattcactgaacta 35270411  T
Q  193 tgcaacgggtcttg 206  Q
    ||||| ||||||||    
T  35270410 tgcaaggggtcttg 35270397  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 35190536 - 35190329
Alignment:
Q  1 gattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatggggggagttcttcaattcaggcaaatgtgaagaagttcagatgaatgtga 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||  || ||||||||||||||||||  |   || ||||| || |||||||| |    
T  35190536 gattgcaacgtcctagtgtgagaagtgatgggtggttggagattgagat-cggagagttcttcaattcaggcctagaagatgaagtccaaatgaatgtta 35190438  T
Q  101 tggagataaagggtggttggaagagtggtctctttcttgaagggatataaattaggcctaagtaacacaattaagcagaattcactgagctatgcaacgg 200  Q
     ||||| |||   |  ||||||||| ||||||||||||||||| ||| || |||||||||||||| || ||| ||||  ||||  ||| |||||||| ||    
T  35190437 aggagacaaa---taattggaagagaggtctctttcttgaaggaatagaagttaggcctaagtaagaccattcagcaacattccgtgaactatgcaaggg 35190341  T
Q  201 gtcttgtgtctt 212  Q
    |||||| |||||    
T  35190340 gtcttgcgtctt 35190329  T

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Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 35147528 - 35147327
Alignment:
Q  1 gattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatggggggagttcttcaattcaggc---aaatgtgaagaagttcagatgaatg 97  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||   ||||||||||||    ||  || ||| || | ||||||||    
T  35147528 gattgcaacgtcctagtgtgagaagcgatgggtggttggagattgagatg-ggggag---ttcaattcaggcctagaagatggagacgtcctgatgaatg 35147433  T
Q  98 tgatggagataaagggtggttggaagagtggtctctttcttgaagggatataaattaggcctaagtaacacaattaagcagaattcactgagctatgcaa 197  Q
    | | ||||| |||   |  ||||||||||||||||||| ||||||| ||| || |||||||||||||| || ||||||||  ||||  ||| ||||||||    
T  35147432 ttaaggagacaaa---taattggaagagtggtctctttgttgaaggaatagaagttaggcctaagtaagaccattaagcaacattccatgaactatgcaa 35147336  T
Q  198 cgggtcttg 206  Q
     ||||||||    
T  35147335 ggggtcttg 35147327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 35200105 - 35199926
Alignment:
Q  1 gattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatggggggagttcttcaattcaggc---aaatgtgaagaagttcagatgaatg 97  Q
    |||||||||| |||||||||||||| |||||||||||||||||||| ||  |||||||||||||||||||||    ||  |||||||||||| ||||||     
T  35200105 gattgcaacgccctagtgtgagaagcgatgggtggttggagattgaaat-cggggagttcttcaattcaggcgaagaagatgaagaagttcaaatgaata 35200007  T
Q  98 tgatggagataaagg---gtggttggaagagtggtctctttcttgaagggatataaattaggcctaagtaacacaattaag 175  Q
    | | ||||| | | |    |  || |||||||||||||||||||||||| ||| || | |||||||||||| |||||||||    
T  35200006 taaaggagacagatgattataattcgaagagtggtctctttcttgaaggaatagaagtcaggcctaagtaagacaattaag 35199926  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 35225086 - 35224920
Alignment:
Q  1 gattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatggggggagttcttcaattcaggc---aaatgtgaagaagttcagatgaatg 97  Q
    ||||||||||||||| ||||||||| ||||| ||||| ||||||||||| ||| |||||||||| |||||||    ||  ||||||||| || |||| ||    
T  35225086 gattgcaacgtcctaatgtgagaagcgatggctggttagagattgagat-gggagagttcttcatttcaggcctagaagatgaagaagtccaaatgagtg 35224988  T
Q  98 tgatggagataaagggtgg---ttggaagagtggtctctttcttgaagggatataaattaggcctaag 162  Q
    | || || |||||||||||   ||||||||| ||| ||||| ||||||| ||| || |||||||||||    
T  35224987 ttattgatataaagggtggtcattggaagagaggtttctttgttgaaggaatagaagttaggcctaag 35224920  T

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Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 35295851 - 35295921
Alignment:
Q  1 gattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatggggggagttcttcaattcaggc 72  Q
    |||||||||  |||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  35295851 gattgcaacagcctagtgtgagaagtgatgggtggttggagattgagat-gggagagttcttcaattcaggc 35295921  T

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Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 34309522 - 34309455
Alignment:
Q  1 gattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatggggggagttcttcaattca 69  Q
    ||||||||||||||| ||| ||||| ||||| ||||||||||||||||| ||| |||||||||||||||    
T  34309522 gattgcaacgtcctaatgtaagaagtgatggatggttggagattgagat-gggagagttcttcaattca 34309455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 35212132 - 35212073
Alignment:
Q  8 acgtcctagtgtgagaagagatgggtggttggagattgagatggggggagttcttcaattc 68  Q
    |||||| ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||    
T  35212132 acgtccgagtgtgagaagtgatgggtggttggagattgagat-gggagagttcttcaattc 35212073  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 35248443 - 35248373
Alignment:
Q  1 gattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatggggggagttcttcaattcaggc 72  Q
    |||||||| || ||| ||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||||    
T  35248443 gattgcaaagttctattgtgagaagcgatgggtggtttgagattgagatg-ggggagttcttcaatttaggc 35248373  T

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Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 35248311 - 35248226
Alignment:
Q  128 gtctctttcttgaagggatataaattaggcctaagtaacacaattaagcagaattcactgagctatgcaacgggtcttgtgtcttg 213  Q
    |||||||  ||||||| ||| || |||| ||||||||| |||||||||||  ||||||||| |||||||| ||||||| |||||||    
T  35248311 gtctcttatttgaaggaatagaagttagacctaagtaatacaattaagcaacattcactgaactatgcaaggggtcttatgtcttg 35248226  T

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Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 35189484 - 35189417
Alignment:
Q  1 gattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatggggggagttcttcaattca 69  Q
    |||||||| ||||| |||||||||| ||| ||||||||||||||| ||  |||||||||||||||||||    
T  35189484 gattgcaatgtccttgtgtgagaagtgataggtggttggagattg-gaatgggggagttcttcaattca 35189417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 35476468 - 35476424
Alignment:
Q  8 acgtcctagtgtgagaagagatgggtggttggagattgagatggg 52  Q
    |||||||||||||||| | ||||||||||||||||||||||||||    
T  35476468 acgtcctagtgtgagacgtgatgggtggttggagattgagatggg 35476424  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 8639074 - 8639004
Alignment:
Q  1 gattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatggggggagttcttcaattcaggc 72  Q
    |||||||||  |||||  ||||||| |||||||||||||||| |||||| ||| ||||||||||||||||||    
T  8639074 gattgcaacaacctagaatgagaagtgatgggtggttggagactgagat-gggagagttcttcaattcaggc 8639004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 35205074 - 35205031
Alignment:
Q  9 cgtcctagtgtgagaagagatgggtggttggagattgagatggg 52  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||    
T  35205074 cgtcctaatgtgagaagtgatgggtggttggagattgagatggg 35205031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 35208289 - 35208239
Alignment:
Q  18 gtgagaagagatgggtggttggagattgagatggggggagttcttcaattca 69  Q
    |||||||| |||||||||||||||||||||||  ||||||||||||||||||    
T  35208289 gtgagaagcgatgggtggttggagattgagat-tggggagttcttcaattca 35208239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 45525629 - 45525586
Alignment:
Q  9 cgtcctagtgtgagaagagatgggtggttggagattgagatggg 52  Q
    |||||| |||||||||| ||||||||||||||||||||||||||    
T  45525629 cgtcctggtgtgagaagtgatgggtggttggagattgagatggg 45525586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 35194650 - 35194602
Alignment:
Q  17 tgtgagaagagatgggtggttggagattgagatggggggagttcttcaat 66  Q
    ||||||||| |||||||||||||||||||| || ||||||||||||||||    
T  35194650 tgtgagaagcgatgggtggttggagattgaaat-gggggagttcttcaat 35194602  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 35219231 - 35219167
Alignment:
Q  7 aacgtcctagtgtgagaagagatgggtggttggagattgagatggggggagttcttcaattcaggc 72  Q
    ||||||||||| ||||||| |||| ||||||||| | |||||| ||| |||||||||| |||||||    
T  35219231 aacgtcctagtatgagaagtgatgagtggttggaaactgagat-gggagagttcttcatttcaggc 35219167  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 35252230 - 35252178
Alignment:
Q  20 gagaagagatgggtggttggagattgagatggggggagttcttcaattcaggca 73  Q
    |||||| ||||||||||| |||||||||||  |||||||||||||||| |||||    
T  35252230 gagaagtgatgggtggtttgagattgagat-tggggagttcttcaatttaggca 35252178  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 33138614 - 33138665
Alignment:
Q  1 gattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatggg 52  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  33138614 gattgcagcgtcctactgtgagaagtgatgggtggttggagattgagatggg 33138665  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18558746 - 18558792
Alignment:
Q  1 gattgcaacgtcctagtgtgagaagagatgggtggttggagattgaga 48  Q
    |||||||| |||||||||||||| | ||||||||||||||||||||||    
T  18558746 gattgcaa-gtcctagtgtgagacgtgatgggtggttggagattgaga 18558792  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 23331964 - 23331914
Alignment:
Q  2 attgcaacgtcctagtgtgagaagagatgggtggttggagattgagatggg 52  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  23331964 attgcatcgtcctaatgtgagaagcgatgggtggttggagattgagatggg 23331914  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 17664562 - 17664613
Alignment:
Q  1 gattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatggg 52  Q
    ||||||||||||||||||| ||| | ||||| ||||||||||||||||||||    
T  17664562 gattgcaacgtcctagtgttagatgtgatggatggttggagattgagatggg 17664613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19246965 - 19247016
Alignment:
Q  1 gattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatggg 52  Q
    ||||||||||||||||||| ||| | ||||| ||||||||||||||||||||    
T  19246965 gattgcaacgtcctagtgttagatgtgatggatggttggagattgagatggg 19247016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 899766 - 899815
Alignment:
Q  19 tgagaagagatgggtggttggagattgagatggggggagttcttcaattca 69  Q
    ||||||| ||||||||||||||||||||||| ||| ||||| |||||||||    
T  899766 tgagaagcgatgggtggttggagattgagat-gggagagttattcaattca 899815  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 53924271 - 53924311
Alignment:
Q  14 tagtgtgagaagagatgggtggttggagattgagatggggg 54  Q
    |||| |||| || ||||||||||||||||||||||||||||    
T  53924271 tagtttgaggagcgatgggtggttggagattgagatggggg 53924311  T

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