View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19944_low_5 (Length: 350)
Name: NF19944_low_5
Description: NF19944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19944_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 31 - 330
Target Start/End: Original strand, 51892547 - 51892846
Alignment:
| Q |
31 |
cctcatagatacaaacccaatacccccataatcaatcaatccgcgcaaaattgcatgacccattaaacagttttaaaatgcatgttaaagaaaattgata |
130 |
Q |
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| T |
51892547 |
cctcatagatacaaacccaataccaccataatcaatcaatccgcgcaaaattgcatgacccattaaacagtttaaaaatgcatgttaaagaaaattgata |
51892646 |
T |
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| Q |
131 |
ttacaatgaaaatgagaattgcaaacaaaaaaccaaacaaagcagatcagagtgaaattgaacctgaaagcataaaaattgaggcgggaatcaaggaaat |
230 |
Q |
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| T |
51892647 |
ttacaatgaaaatgagaattgcaaacaaaaaaccaaacaaagcagatcagagtgaaattgaacctgaaagcataaaaattgaggcgggaatcaaggaaat |
51892746 |
T |
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| Q |
231 |
cgaagtgaatagggtttgaattagcgaaatgtgtgaaaaaggtttgatctttggagaggaaattgaagggtgagaaagagagagagactagggttctact |
330 |
Q |
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| T |
51892747 |
cggagtgaatagggtttgaattggcgaaatgtgtgaaaaaggtttgatctttggagaggaaattgaagggtgagaaagagagagagactagggttctact |
51892846 |
T |
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