View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19944_low_8 (Length: 250)

Name: NF19944_low_8
Description: NF19944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19944_low_8
NF19944_low_8
[»] chr1 (2 HSPs)
chr1 (1-242)||(7555139-7555380)
chr1 (114-181)||(19467418-19467485)
[»] chr6 (12 HSPs)
chr6 (62-242)||(9412065-9412242)
chr6 (77-183)||(6417092-6417198)
chr6 (113-236)||(11936024-11936147)
chr6 (113-236)||(11948004-11948127)
chr6 (133-183)||(28935338-28935388)
chr6 (103-164)||(7132324-7132385)
chr6 (103-164)||(7135247-7135308)
chr6 (103-164)||(7138170-7138231)
chr6 (133-181)||(6423907-6423955)
chr6 (133-242)||(6596241-6596347)
chr6 (133-181)||(6395539-6395587)
chr6 (141-181)||(6427183-6427223)
[»] chr4 (13 HSPs)
chr4 (79-239)||(8186311-8186471)
chr4 (69-183)||(553759-553873)
chr4 (62-242)||(1755494-1755674)
chr4 (103-181)||(661860-661938)
chr4 (134-242)||(571271-571379)
chr4 (60-242)||(7225094-7225275)
chr4 (63-157)||(53760229-53760323)
chr4 (61-170)||(1495619-1495728)
chr4 (103-185)||(55907651-55907733)
chr4 (137-185)||(3437630-3437678)
chr4 (98-241)||(21833248-21833391)
chr4 (62-164)||(1545883-1545985)
chr4 (103-239)||(641951-642087)
[»] chr7 (4 HSPs)
chr7 (77-183)||(10615713-10615819)
chr7 (88-183)||(10169011-10169106)
chr7 (88-183)||(10176536-10176631)
chr7 (62-242)||(7977814-7977994)
[»] chr3 (5 HSPs)
chr3 (113-236)||(1657474-1657597)
chr3 (77-242)||(13469599-13469764)
chr3 (61-239)||(51113131-51113309)
chr3 (129-178)||(51120658-51120707)
chr3 (62-183)||(51763325-51763446)
[»] chr8 (10 HSPs)
chr8 (138-242)||(32151909-32152013)
chr8 (64-183)||(17642872-17642991)
chr8 (101-185)||(14004141-14004225)
chr8 (59-183)||(17635588-17635712)
chr8 (113-235)||(28246044-28246166)
chr8 (62-164)||(34935922-34936024)
chr8 (109-174)||(18314620-18314685)
chr8 (101-185)||(5766579-5766663)
chr8 (134-199)||(21236138-21236203)
chr8 (134-182)||(18318650-18318698)
[»] scaffold1155 (1 HSPs)
scaffold1155 (61-164)||(1820-1923)
[»] scaffold0345 (1 HSPs)
scaffold0345 (61-164)||(8293-8396)
[»] scaffold0105 (1 HSPs)
scaffold0105 (61-164)||(30583-30686)
[»] chr2 (1 HSPs)
chr2 (103-185)||(1036587-1036669)
[»] chr5 (3 HSPs)
chr5 (117-205)||(41900484-41900572)
chr5 (119-183)||(28532813-28532877)
chr5 (154-205)||(32268513-32268564)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 7555380 - 7555139
Alignment:
Q  1 accaacctcacctcccttgtcttcgctcgcaactgccgtgatatcgacaagctacttagcgaaatctcttgtttcccattgaacctaacatcacttgata 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7555380 accaacctcacctcccttgtcttcgctcgcaactgccttgatatcgacaagctacttagcgaaatctcttgtttcccattgaacctaacatcacttgata 7555281  T
Q  101 tttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7555280 tttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaa 7555181  T
Q  201 tagcaatgacttgttactcattgctgaatgtttccctttgct 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7555180 tagcaatgacttgttactcattgctgaatgtttccctttgct 7555139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 19467418 - 19467485
Alignment:
Q  114 caccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgtt 181  Q
    |||||| || |||| ||| ||||||| |||| | ||||||||||||||||| ||||| ||||||||||    
T  19467418 caccattcccgcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgtt 19467485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 62 - 242
Target Start/End: Complemental strand, 9412242 - 9412065
Alignment:
Q  62 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 161  Q
    |||||||| |||| |||||||| ||  |||||||| || | |||||||| | |||||| || ||   ||| |||||||||||||||||||||||||||||    
T  9412242 aaatctctcgttttccattgaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaac 9412146  T
Q  162 tttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgct 242  Q
    |||||||||| ||||||  || | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9412145 tttaacctcattcacttcctcaagaatgggttctatcaatagcaatgacttgttactcattgctgaatgtttccctttgct 9412065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 6417198 - 6417092
Alignment:
Q  77 cattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcac 176  Q
    |||||||| | ||||||||| |||| ||||||||||||||  | || | || ||| || ||||||||||||||||| | ||||||||| ||||| |||||    
T  6417198 cattgaacatcacatcacttaatatctccaaccaacccacttttcccgtaaatgggttacgagctttctcccaaaagaatacaactttgacctctctcac 6417099  T
Q  177 ttgttcc 183  Q
    |||||||    
T  6417098 ttgttcc 6417092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 236
Target Start/End: Original strand, 11936024 - 11936147
Alignment:
Q  113 ccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgactt 212  Q
    ||||||||||  ||| ||| |||| ||||||||| ||||| |||| || ||||||||| ||||| ||||||   || || ||||||||| ||| |||| |    
T  11936024 ccaccatcccgacaaatgggttgcaagctttctctcaaaacattaaaaatttaacctctctcacgtgttccttcattgaatctatcaatcgcactgacct 11936123  T
Q  213 gttactcattgctgaatgtttccc 236  Q
    ||| ||||||||||| ||||||||    
T  11936124 gttcctcattgctgattgtttccc 11936147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 236
Target Start/End: Original strand, 11948004 - 11948127
Alignment:
Q  113 ccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgactt 212  Q
    ||||||||||  ||| ||| |||| ||||||||| ||||| |||| || ||||||||| ||||| ||||||   || || ||||||||| ||| |||| |    
T  11948004 ccaccatcccgacaaatgggttgcaagctttctctcaaaacattaaaaatttaacctctctcacgtgttccttcattgaatctatcaatcgcactgacct 11948103  T
Q  213 gttactcattgctgaatgtttccc 236  Q
    ||| ||||||||||| ||||||||    
T  11948104 gttcctcattgctgattgtttccc 11948127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 28935388 - 28935338
Alignment:
Q  133 ttgcgagctttctcccaaaatattacaactttaacctcactcacttgttcc 183  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| ||||||    
T  28935388 ttgcgagccttctcccaaaacattacaactttaacctcactcacatgttcc 28935338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 7132385 - 7132324
Alignment:
Q  103 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaacttt 164  Q
    |||||||||| |||| | ||||||| ||| |||||||||||||||||||| |||||||||||    
T  7132385 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 7132324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 7135308 - 7135247
Alignment:
Q  103 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaacttt 164  Q
    |||||||||| |||| | ||||||| ||| |||||||||||||||||||| |||||||||||    
T  7135308 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 7135247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 7138231 - 7138170
Alignment:
Q  103 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaacttt 164  Q
    |||||||||| |||| | ||||||| ||| |||||||||||||||||||| |||||||||||    
T  7138231 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 7138170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 6423955 - 6423907
Alignment:
Q  133 ttgcgagctttctcccaaaatattacaactttaacctcactcacttgtt 181  Q
    |||||||||||||||||||| || |||||||| ||||| ||||||||||    
T  6423955 ttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 242
Target Start/End: Original strand, 6596241 - 6596347
Alignment:
Q  133 ttgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtt 232  Q
    ||||||| |||||||||||| || |||||||| ||||| ||||||||||| | ||   | | | || | |  ||||||||||||||||||||||| ||||    
T  6596241 ttgcgagttttctcccaaaacataacaactttgacctctctcacttgttctataa---actttctctacaaaaatgacttgttactcattgctgattgtt 6596337  T
Q  233 tccctttgct 242  Q
    |||| |||||    
T  6596338 tcccattgct 6596347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 6395587 - 6395539
Alignment:
Q  133 ttgcgagctttctcccaaaatattacaactttaacctcactcacttgtt 181  Q
    |||| |||| |||||||||||||||||||||| ||||| |||| |||||    
T  6395587 ttgcaagctctctcccaaaatattacaactttgacctctctcagttgtt 6395539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 6427223 - 6427183
Alignment:
Q  141 tttctcccaaaatattacaactttaacctcactcacttgtt 181  Q
    |||||||||||||||||||||||| ||||  ||||||||||    
T  6427223 tttctcccaaaatattacaactttgacctttctcacttgtt 6427183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 239
Target Start/End: Original strand, 8186311 - 8186471
Alignment:
Q  79 ttgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcactt 178  Q
    |||||||| ||||||||  || | || ||| |||||||||| ||||||| ||||||||||| | |||||| ||||||||||||||| ||||||||||| |    
T  8186311 ttgaacctcacatcactcaatctctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacat 8186410  T
Q  179 gttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttcccttt 239  Q
    ||||||| || || ||||||||||||| |||| | || ||||| || || ||||| |||||    
T  8186411 gttccaacattgaatctatcaatagcactgacatcttcctcatcgccgattgttttccttt 8186471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 553873 - 553759
Alignment:
Q  69 ttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacc 168  Q
    |||||| ||||||||||| |||||||| ||| | ||| |  |||||||||| || |||| ||| |||||||||||||||||||| ||||||||||| |||    
T  553873 ttgttttccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacc 553774  T
Q  169 tcactcacttgttcc 183  Q
    || ||||| ||||||    
T  553773 tctctcacctgttcc 553759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 242
Target Start/End: Complemental strand, 1755674 - 1755494
Alignment:
Q  62 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 161  Q
    |||||||| ||||||||||||| || |||||  || || | |||||||||| | |||| ||  | |  || |||| ||||||||| ||||| ||||||||    
T  1755674 aaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaaagggttgcaagctttctctcaaaagattacaac 1755575  T
Q  162 tttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgct 242  Q
    ||| ||||| ||||| |||||||| || | |  | || ||| ||||||||| || ||||||||||| ||||||||||||||    
T  1755574 tttgacctctctcacatgttccaacatcgctcatctccataccaatgacttcttcctcattgctgactgtttccctttgct 1755494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 181
Target Start/End: Complemental strand, 661938 - 661860
Alignment:
Q  103 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgtt 181  Q
    ||||||||| ||||||| || || | ||| |||||||||||||||||| ||||||||||||||||||| |||| |||||    
T  661938 tccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctcatttgtt 661860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 571379 - 571271
Alignment:
Q  134 tgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgttt 233  Q
    ||||||| ||||||||||||||||||||||| || || |||| ||||||| | | ||||||||||| || ||  |||||||| |||||  | || |||||    
T  571379 tgcgagcattctcccaaaatattacaactttgacatctctcaattgttcctacaaggattctatcagtaccaccgacttgttgctcatctcggactgttt 571280  T
Q  234 ccctttgct 242  Q
    |||||||||    
T  571279 ccctttgct 571271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 242
Target Start/End: Original strand, 7225094 - 7225275
Alignment:
Q  60 cgaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattaca 159  Q
    |||||||||| |||| |||||||| || ||||||||| |||| || ||  || ||| ||| || |||  ||| |||| |||| | || ||||||||||||    
T  7225094 cgaaatctctcgttttccattgaaactcacatcacttaatatctcgaataaatccatcattccagcacgtgggttgcaagctctttctcaaaatattaca 7225193  T
Q  160 actttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgct 242  Q
    ||||| ||||| ||||| |||||| | ||  ||||| ||| ||||| |||| |||| ||||| || || ||||||||||||||    
T  7225194 actttgacctctctcacatgttcc-acatttattctgtcactagcactgacatgttcctcatcgcggattgtttccctttgct 7225275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 53760229 - 53760323
Alignment:
Q  63 aatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatatta 157  Q
    ||||||| ||||||||||||| || ||||||||  || | ||||||||| |||| |||| ||||| ||| ||||||||||||| |||||| ||||    
T  53760229 aatctctcgtttcccattgaaactcacatcactcaatctctccaaccaatccactatccatgcaaatgggttgcgagctttcttccaaaacatta 53760323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 170
Target Start/End: Original strand, 1495619 - 1495728
Alignment:
Q  61 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 160  Q
    |||||||||  ||| ||||||||  | ||||| |||||| | ||  |||||||||| || ||||| || |||||||||  |||||||||||| |||||||    
T  1495619 gaaatctctctttttccattgaaaatcacatcccttgatttatctgaccaacccacgattcctgctataggattgcgatatttctcccaaaaaattacaa 1495718  T
Q  161 ctttaacctc 170  Q
    ||||||||||    
T  1495719 ctttaacctc 1495728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 55907651 - 55907733
Alignment:
Q  103 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 185  Q
    ||||||||||| | |||||| || | ||| || ||||||||||||||||||||||||||||| |  || |||| |||||||||    
T  55907651 tccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgaattctctcatttgttccaa 55907733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 3437630 - 3437678
Alignment:
Q  137 gagctttctcccaaaatattacaactttaacctcactcacttgttccaa 185  Q
    |||||||||||||||| ||||||||||| ||||| |||| |||||||||    
T  3437630 gagctttctcccaaaagattacaactttgacctctctcagttgttccaa 3437678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 241
Target Start/End: Original strand, 21833248 - 21833391
Alignment:
Q  98 atatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctat 197  Q
    |||| |||||| |||||||||| || |||  ||| ||||||| |||  | ||||| ||||| ||||| ||||| ||||||||||||||||| | |  | |    
T  21833248 atatctccaacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttccaaaattgctaattt 21833347  T
Q  198 caatagcaatgacttgttactcattgctgaatgtttccctttgc 241  Q
    ||||| || |||| |||| ||||| |  ||||||||||| ||||    
T  21833348 caataccactgacctgttcctcatcgtcgaatgtttccccttgc 21833391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 1545985 - 1545883
Alignment:
Q  62 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 161  Q
    ||||||||  ||| |||||||| || ||| |||||| | ||||   |||| |||| |||||||| | ||| |||||| ||||||| ||||||||||||||    
T  1545985 aaatctctacttttccattgaaactcacaacacttgttctttctgtccaagccactatccctgccaatgggttgcgatctttctctcaaaatattacaac 1545886  T
Q  162 ttt 164  Q
    |||    
T  1545885 ttt 1545883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 239
Target Start/End: Complemental strand, 642087 - 641951
Alignment:
Q  103 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaata 202  Q
    ||||||| | ||||||| ||||| | ||| |||| | |||||||||| || ||| |||||||||| || ||||  |||||||||||| |||| || || |    
T  642087 tccaaccgatccaccattcctgctaatgggttgcaatctttctcccagaagatttcaactttaacttctctcaaatgttccaaaatgaattccataaaaa 641988  T
Q  203 gcaatgacttgttactcattgctgaatgtttcccttt 239  Q
     ||  |||||||| || |||||  | |||||||||||    
T  641987 acaccgacttgttccttattgccaattgtttcccttt 641951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 10615819 - 10615713
Alignment:
Q  77 cattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcac 176  Q
    |||||||| | ||||||||| |||||||||||||||||||  | || |||| ||| || ||||||||||||||||| ||||||||||| ||||| |||||    
T  10615819 cattgaacatcacatcacttaatatttccaaccaacccacagttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcac 10615720  T
Q  177 ttgttcc 183  Q
    |||||||    
T  10615719 ttgttcc 10615713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 10169011 - 10169106
Alignment:
Q  88 acatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttcc 183  Q
    |||||||| ||||||||| |||||  |||||| || |||| ||| ||||||| |||||| |||||||||| |||||| ||||| ||||||||||||    
T  10169011 acatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttcc 10169106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 10176536 - 10176631
Alignment:
Q  88 acatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttcc 183  Q
    |||||||| ||||||||| |||||  |||||| || |||| ||| ||||||| |||||| |||||||||| |||||| ||||| ||||||||||||    
T  10176536 acatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttcc 10176631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 242
Target Start/End: Complemental strand, 7977994 - 7977814
Alignment:
Q  62 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 161  Q
    |||| |||||||||||||||||  | || |||||  || | |||||||| || ||||| || ||   ||| |||| || |||||||||||||||| ||||    
T  7977994 aaatttcttgtttcccattgaaaatcacgtcactcaatctctccaaccaccctaccattccggcttatgggttgccagttttctcccaaaatattgcaac 7977895  T
Q  162 tttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgct 242  Q
    ||| ||||||||||  ||||| || || || ||||| |||| |||  || |||| ||||| || || ||||||||||||||    
T  7977894 tttgacctcactcaaatgttctaacattgaatctattaatatcaaccacatgtttctcatagcagattgtttccctttgct 7977814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 1657597 - 1657474
Alignment:
Q  113 ccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgactt 212  Q
    ||||||||||  ||| ||| |||| ||||||||| ||||| |||| |||||||||||| ||||| ||||||   || || ||||||||| ||| |||| |    
T  1657597 ccaccatcccgacaaatgggttgcaagctttctctcaaaacattaaaactttaacctctctcacgtgttccttcattgaatctatcaatcgcactgacct 1657498  T
Q  213 gttactcattgctgaatgtttccc 236  Q
    ||| ||||||||||| ||||||||    
T  1657497 gttcctcattgctgattgtttccc 1657474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 242
Target Start/End: Original strand, 13469599 - 13469764
Alignment:
Q  77 cattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcac 176  Q
    |||||||| | ||||||||| || | ||||||||||||||  | ||||||| ||| || ||||||||||||||||| | ||||||  | ||||| |||||    
T  13469599 cattgaacatcacatcacttaatctctccaaccaacccactgttcctgcaaatgggttacgagctttctcccaaaagaatacaacgctgacctctctcac 13469698  T
Q  177 ttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccctttgct 242  Q
    ||||||| | || | |  | ||||||||| |||| |||| || ||||| |||||||| || |||||    
T  13469699 ttgttcccacattgctaatttcaatagcagtgacctgttccttattgcagaatgttttccgttgct 13469764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 239
Target Start/End: Original strand, 51113131 - 51113309
Alignment:
Q  61 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 160  Q
    ||||||||| ||||||||||||| || || |||||  |||| |||||| ||  ||  || ||  ||| ||||||||||||||||||  ||||||||||||    
T  51113131 gaaatctctcgtttcccattgaaacttacttcactcaatatctccaacaaaagcattattcccacaaatggattgcgagctttctcggaaaatattacaa 51113230  T
Q  161 ctttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttcccttt 239  Q
    || | ||||| |||||||||||  | ||   || |||||| ||||  ||||||||  |||| |||||||| ||||||||    
T  51113231 ctctgacctctctcacttgttcgcacataagttgtatcaacagcaccgacttgttggtcatcgctgaatgcttcccttt 51113309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 51120658 - 51120707
Alignment:
Q  129 tggattgcgagctttctcccaaaatattacaactttaacctcactcactt 178  Q
    |||||||||||||||||| |||||| |||||||||| || ||||||||||    
T  51120658 tggattgcgagctttctctcaaaatgttacaactttgacttcactcactt 51120707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 51763325 - 51763446
Alignment:
Q  62 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 161  Q
    |||||||| ||||||||||||| || ||||||||| || | ||||| || |  ||| | ||| ||| ||| ||||||| ||| || ||||| ||||||||    
T  51763325 aaatctctcgtttcccattgaaactcacatcacttaatctctccaaacagcttacctttcctacaaatgggttgcgagttttttcacaaaagattacaac 51763424  T
Q  162 tttaacctcactcacttgttcc 183  Q
    ||| || || ||||||||||||    
T  51763425 tttgacatctctcacttgttcc 51763446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 32152013 - 32151909
Alignment:
Q  138 agctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgacttgttactcattgctgaatgtttccct 237  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||    ||  ||||| ||||| |||  |||||||| |||||||| || |||||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctcacttgttctcgtatttattctttcaatggcaccgacttgttcctcattgccgattgtttccct 32151914  T
Q  238 ttgct 242  Q
    |||||    
T  32151913 ttgct 32151909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 17642872 - 17642991
Alignment:
Q  64 atctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactt 163  Q
    ||||||||||| |||||||| || ||||||||  || | |||||||| | |||||| ||  | | ||| || | |||||||||||| |||||||||||||    
T  17642872 atctcttgttttccattgaaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactt 17642971  T
Q  164 taacctcactcacttgttcc 183  Q
    | ||||| ||||||||||||    
T  17642972 tgacctctctcacttgttcc 17642991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 14004225 - 14004141
Alignment:
Q  101 tttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 185  Q
    ||||||||||||||| | | ||||| | ||| |||||||||||||| || || ||||||||||| |||||||| | |||||||||    
T  14004225 tttccaaccaacccatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaa 14004141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 183
Target Start/End: Original strand, 17635588 - 17635712
Alignment:
Q  59 gcgaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattac 158  Q
    |||||||||||  ||| |||||||| || | ||||||  || | |||||||||| |||||| ||  | | ||| || |||||||||||||  ||||||||    
T  17635588 gcgaaatctctccttttccattgaaactcatatcactcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattac 17635687  T
Q  159 aactttaacctcactcacttgttcc 183  Q
    |||||| ||||| ||||||||||||    
T  17635688 aactttgacctctctcacttgttcc 17635712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 235
Target Start/End: Original strand, 28246044 - 28246166
Alignment:
Q  113 ccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagcaatgactt 212  Q
    ||||||||||  ||| ||| |||| ||||||||| ||||| |||| |||||||||||| |||||  |||||   || || ||||||||| ||| |||| |    
T  28246044 ccaccatcccgacaaatgggttgcaagctttctctcaaaacattaaaactttaacctctctcacgcgttccttcattgaatctatcaatcgcactgacct 28246143  T
Q  213 gttactcattgctgaatgtttcc 235  Q
    ||| ||||||| ||| |||||||    
T  28246144 gttcctcattgttgattgtttcc 28246166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 34935922 - 34936024
Alignment:
Q  62 aaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaac 161  Q
    |||| ||| |||||||||||||||| ||||||||  || | |||||||| |||| ||| ||   || ||| ||||||| |||||| ||||||||||||||    
T  34935922 aaatttctagtttcccattgaaccttacatcactcaatctctccaaccatcccatcattccacaaaatggtttgcgagttttctcacaaaatattacaac 34936021  T
Q  162 ttt 164  Q
    |||    
T  34936022 ttt 34936024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 18314620 - 18314685
Alignment:
Q  109 caacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactc 174  Q
    ||||||||||| || |||| ||| || |||| |||||| ||||||||||||||||| |||||||||    
T  18314620 caacccaccattcccgcaaatggcttacgagttttctctcaaaatattacaactttgacctcactc 18314685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 5766579 - 5766663
Alignment:
Q  101 tttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 185  Q
    |||||||||||| || | | ||||| | ||| |||||||||||||| || || ||||||||||| |||||||| | |||||||||    
T  5766579 tttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaa 5766663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 21236203 - 21236138
Alignment:
Q  134 tgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatca 199  Q
    ||||||| ||||||||||||| ||||||||| || || |||| ||||||| | | |||||||||||    
T  21236203 tgcgagcattctcccaaaatactacaactttgacatctctcaattgttcctacaaggattctatca 21236138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 18318650 - 18318698
Alignment:
Q  134 tgcgagctttctcccaaaatattacaactttaacctcactcacttgttc 182  Q
    |||||| ||||| | |||||||||||||||| ||||||||||| |||||    
T  18318650 tgcgagttttctgcaaaaatattacaactttgacctcactcacatgttc 18318698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 164
Target Start/End: Original strand, 1820 - 1923
Alignment:
Q  61 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 160  Q
    ||||||||| |||||||||||||||| ||||||||  || | ||| |||||||||  || || |||  ||| ||||||| ||| ||||||||||||||||    
T  1820 gaaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaa 1919  T
Q  161 cttt 164  Q
    ||||    
T  1920 cttt 1923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 164
Target Start/End: Complemental strand, 8396 - 8293
Alignment:
Q  61 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 160  Q
    ||||||||| |||||||||||||||| ||||||||  || | ||| |||||||||  || || |||  ||| ||||||| ||| ||||||||||||||||    
T  8396 gaaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaa 8297  T
Q  161 cttt 164  Q
    ||||    
T  8296 cttt 8293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 164
Target Start/End: Original strand, 30583 - 30686
Alignment:
Q  61 gaaatctcttgtttcccattgaacctaacatcacttgatatttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaa 160  Q
    ||||||||| |||||||||||||||| ||||||||  || | ||| |||||||||  || || |||  ||| ||||||| ||| ||||||||||||||||    
T  30583 gaaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaa 30682  T
Q  161 cttt 164  Q
    ||||    
T  30683 cttt 30686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 1036587 - 1036669
Alignment:
Q  103 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 185  Q
    ||||||||||| | |||||| || | ||| || ||||||||||||||||||||||||||||| || || |||| |||||||||    
T  1036587 tccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 1036669  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 41900484 - 41900572
Alignment:
Q  117 catccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagca 205  Q
    |||||| ||| |||| || |||||||| ||| |||| ||||||||||| ||||| |||||||||| | ||||| ||| |||||||||||    
T  41900484 catccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgttacgaaatgcattatatcaatagca 41900572  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 28532877 - 28532813
Alignment:
Q  119 tccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttcc 183  Q
    |||| |||| ||||||||||||||| || ||||| ||||||||||| |||||  |||||||||||    
T  28532877 tcccagcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 28532813  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 32268564 - 32268513
Alignment:
Q  154 attacaactttaacctcactcacttgttccaaaatggattctatcaatagca 205  Q
    ||||||||||| ||||| |||||||||||||||||| | | |||||||||||    
T  32268564 attacaactttgacctctctcacttgttccaaaatgcaatatatcaatagca 32268513  T

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