View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19945_high_3 (Length: 565)
Name: NF19945_high_3
Description: NF19945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19945_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 18 - 552
Target Start/End: Original strand, 44459550 - 44460084
Alignment:
| Q |
18 |
aacatgaagttgagcactttggtaaaatgtctcgcattcttgataagatttctgaattacatcttttagtttctactactgattcaaagataagggacaa |
117 |
Q |
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| T |
44459550 |
aacatgaagttgagcactttggtaaaatgtctcgcattcttgataagatttctgaattacatcttttagtttctactactgattcaaagataagggacaa |
44459649 |
T |
|
| Q |
118 |
gagagtgctaaggcgtcatcatttaatcaggaagctgcaagaaaggtgcaaatcaatgcataagttactttctgatcatataaaccgcgaggaaatagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44459650 |
gagagtgctaaggcgtcatcatttaatcaggaagctgcaagaaaggtgcaaatcaatgcataagttactttctgatcatataaaccgcgaggaaatagaa |
44459749 |
T |
|
| Q |
218 |
atttggcctataattagagaattcttctcgaaccgggagcaagggaagatcataggatgcatacttggaagaataagtgcagaaatattacaagatatga |
317 |
Q |
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| T |
44459750 |
atttggcctataattagagaattcttctcgaaccgggagcaagggaagatcatagggtgcatacttggaagaataagtgcagaaatattacaagatatga |
44459849 |
T |
|
| Q |
318 |
taccttggctaatggcatctttaacacaggaagaacaacatgttttaatgttcttatggtccatggctactaagaatacaatgtttgatgaatggttagg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44459850 |
taccttggctaatggcatctttaacacaggaagaacaacatgttttaatgttcttatggtccatggctactaagaatacaatgtttgatgaatggttagg |
44459949 |
T |
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| Q |
418 |
tgaatggtggaatgggtacagtgtagctaaggcagcagatggatcaaatgatgcccctctacagaatgttgagccactggaaattatatccaaatatttg |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44459950 |
tgaatggtggaatgggtacagtgtagctaaggcagcagatggatcaaatgatgcccctctacagaatgttgagccactggaaattatatccaaatatttg |
44460049 |
T |
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| Q |
518 |
tcagaagaggttcttaatgcattacaagaataatc |
552 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
44460050 |
tcagaagaggttcttaatgcattacaagaagaatc |
44460084 |
T |
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