View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19945_high_5 (Length: 383)
Name: NF19945_high_5
Description: NF19945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19945_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 95 - 342
Target Start/End: Original strand, 13779268 - 13779515
Alignment:
| Q |
95 |
tcaaaacgacactttaaaaggaacagagggcgtattaagtactacgacgaacgaaatgccacacagtgcaggacatgggcaccacaaataacacaactga |
194 |
Q |
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| T |
13779268 |
tcaaaacgaaaattaaaaaggaacggagggagtatgaaatactacgaccaacaaaaggccacacattgcaggacatgggcaccacaaaagacacaattgg |
13779367 |
T |
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| Q |
195 |
tagaacaatattttccacagattttgcaccacttatttgggaatactatgccaatggaacaacacgactttaacacctaaactgcagatttttgtcatat |
294 |
Q |
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| T |
13779368 |
cagaacaaattttttcatagattttgcaccacttatttgggaatactatgtcaatggaacaacacgaatttaacacctaaattggagatttttatcatta |
13779467 |
T |
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| Q |
295 |
caattcatctcagtggccaacagctagtaaagcaaataacagcaaaag |
342 |
Q |
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| T |
13779468 |
caattcctctcggtgggaaacagctaggaaagcaaatagcagcaaaag |
13779515 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 5710053 - 5710020
Alignment:
| Q |
17 |
tgattagtaaattaaaatgatgtgataataggaa |
50 |
Q |
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| T |
5710053 |
tgattagtaaattaaaatgatgtgataataggaa |
5710020 |
T |
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