View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19945_high_8 (Length: 287)
Name: NF19945_high_8
Description: NF19945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19945_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 11022936 - 11023206
Alignment:
| Q |
1 |
aacttactactcttccaaagactttagaaggagtaatcagcgaagatacatttcagaaaactagatcctatagccttgttcacaggtttttattttgttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11022936 |
aacttactactcttccaaagactttagaaggagtaatcagcgaagatacatttcagaaaactagatcctatagccttgatcacaggtttttattttgttt |
11023035 |
T |
|
| Q |
101 |
tatgtagatttcttatcctattagatgttgatgtgtaattatgaagttttattccggtatgtcttgctagtaactcttatacatggctgttcactatttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11023036 |
tatgtagatttcttatcctattagatgttgatgtgtaattatgaagttttattccagtatgtcttgctagtaactcttatacatggctgttcactatttc |
11023135 |
T |
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| Q |
201 |
agtcgcttccattttgtttgccaatttgtgacaatagtgagggattctgcaattttgttctttggggtaat |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11023136 |
agtcgcttccattttgtttgccaatttgtgacaatagtgagggattctgcaattttgttctttggggtaat |
11023206 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 29813631 - 29813554
Alignment:
| Q |
1 |
aacttactactcttccaaagactttagaaggagtaatcagcgaagatacatttcagaaaactagatcctatagccttg |
78 |
Q |
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||||| |||||||||||||| |||||||||||||||||||| |||| | |||| ||||| ||||| ||||||| |||| |
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| T |
29813631 |
aacttcctactcttccaaagtctttagaaggagtaatcagccaagagaaatttgagaaatctagagcctatagtcttg |
29813554 |
T |
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