View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19945_low_1 (Length: 826)
Name: NF19945_low_1
Description: NF19945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19945_low_1 |
 | |
|
| [»] scaffold0393 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 788; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 788; E-Value: 0
Query Start/End: Original strand, 9 - 808
Target Start/End: Original strand, 38523971 - 38524770
Alignment:
| Q |
9 |
agtgagatgaacgtaaagtggtttacatttgtatacaattatgaaaaaatcggttgaacaataaattcaagattaaaaatgaattgtagaggcgaaaact |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38523971 |
agtgagatgaacgtaaagtggtttacatttgtatacaattatgaaaaaatcggttgaacaataaattcaagattaaaaatgaattgtagaggcgaaaact |
38524070 |
T |
|
| Q |
109 |
tcaaattttagcttcctgttaaaatgagttcggaatgcaaaatcaattttacttgagaactccaaacatgtcaaaatcagttctccttctttgaaatcaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38524071 |
tcaaattttagcttcctgttaaaatgagttcggaatgcaaaatcaattttacttgagaactccaaacatgtcaaaatcagttctccttctttgaaataaa |
38524170 |
T |
|
| Q |
209 |
ttttgacttctccaaaagttaaaccaaagatacactaaaatcatgcaaataagttgttttaaatagtttatttaatacatatcagggaggggggaattga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38524171 |
ttttgacttctccaaaagttaaaccaaagatacactaaaatcatgcaaataagttgttttaaatagtttatttaatacatatcagggaggggggaattga |
38524270 |
T |
|
| Q |
309 |
aaagggtgatgaattatgactataccaaaagtgaaaccatatgtagccatcagggctttgttcacaaggattattcctacagatgtgactacattgaaca |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38524271 |
aaagggtgatgaattatgactataccaaaagtgaaaccatatgtagccatcagggctttgttcacaaggattattcctacagatgtgactacattgaaca |
38524370 |
T |
|
| Q |
409 |
gccatgatgcaagatcaagtgcaatcttcctatcccccttggttgtagaatccatatcgaaacctaactttcttatctgcatagaaggagaaaaaacgtc |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38524371 |
gccatgatgcaagatcaagtgcaatcttcctatcccccttggttgtagaatccatatcgaaacctaactttcttatctgcatagaaggagaaaaaacgtc |
38524470 |
T |
|
| Q |
509 |
gtcagaagcacaacaaattccaatgaaatagttcaacatacaacttaaaaaatcattaaaattagtgatctctgggaacaaaacagcattaaaactctta |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38524471 |
gtcagaagcacaacaaattccaatgaaatagttcaacatacaacttaaaaaatcattaaaattagtgatctctgggaacaaaacagcattaaaactctta |
38524570 |
T |
|
| Q |
609 |
aggaatgctttgaaactcatgcgatcctactcaacttgacggattagtatccgcaattgcacagggcattactcaatttgcatctaataaacatagataa |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
38524571 |
aggaatgctttgaaactcatgcgatcctactcaacttgacggattagtatccgcaattgcacagggcaatactcaatttacatctaataaacatagataa |
38524670 |
T |
|
| Q |
709 |
aaataaaacaataaccatgaaatgaaagtgagattgcacaatcctcttcagattcattaatcctctcactttatagcaattttaattcttaggaacatca |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38524671 |
aaataaaacaataaccatgaaatgaaagtgagattgcacaatcctcttcagattcattaatcctctcactttatagcaattttaattcttaggaacatca |
38524770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 342 - 418
Target Start/End: Original strand, 43460651 - 43460727
Alignment:
| Q |
342 |
aaaccatatgtagccatcagggctttgttcacaaggattattcctacagatgtgactacattgaacagccatgatgc |
418 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||| || || || || |||| ||||||||| |
|
|
| T |
43460651 |
aaaccatatgtggccatcagggctttgttcacaaggattattcccacagacgtaacgacgttaaacaaccatgatgc |
43460727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 21007763 - 21007839
Alignment:
| Q |
172 |
aaacatgtcaaaatcagttctccttctttgaaatcaattttgacttctccaaaagttaaaccaaagatacactaaaa |
248 |
Q |
| |
|
|||||||||||||||| || | ||||| |||||||||||| || |||||||||| |||||||| || |||||||| |
|
|
| T |
21007763 |
aaacatgtcaaaatcaattatatatctttaaaatcaattttggctcctccaaaagtgaaaccaaatatccactaaaa |
21007839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 218045 - 218090
Alignment:
| Q |
202 |
aaatcaattttgacttctccaaaagttaaaccaaagatacactaaa |
247 |
Q |
| |
|
|||||||||||| ||| ||||||||| |||||||| |||||||||| |
|
|
| T |
218045 |
aaatcaattttgccttatccaaaagtgaaaccaaacatacactaaa |
218090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 51667139 - 51667074
Alignment:
| Q |
149 |
aatcaattttacttgagaac-tccaaacatgtcaaaatcagttctccttctttgaaatcaattttg |
213 |
Q |
| |
|
|||||||| ||||||||| | || ||||||||||||||||||| | | ||||| |||||||||||| |
|
|
| T |
51667139 |
aatcaattatacttgagagcatcaaaacatgtcaaaatcagttgtacatctttaaaatcaattttg |
51667074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 4908863 - 4908737
Alignment:
| Q |
62 |
ttgaacaataaattcaagattaaaaatgaattgtagaggcgaaaacttcaaattttagcttcctgttaaaatgagttcggaatgcaaaatcaattttact |
161 |
Q |
| |
|
|||||||||||| | ||| | ||||| ||||||||| || ||| || ||||||||||||| |||| ||| | ||||||| |||||||||||| |||| |
|
|
| T |
4908863 |
ttgaacaataaagttaaggctgaaaatcaattgtagaagccaaatctacaaattttagctttaagttagaataaattcggaaggcaaaatcaattctact |
4908764 |
T |
|
| Q |
162 |
tgagaac-tccaaacatgtcaaaatca |
187 |
Q |
| |
|
|| ||| | ||||||||||||||||| |
|
|
| T |
4908763 |
cgaaaacatacaaacatgtcaaaatca |
4908737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 227
Target Start/End: Complemental strand, 45369227 - 45369070
Alignment:
| Q |
71 |
aaattcaagattaaaaatgaattgtagaggcgaaaacttcaaattttagcttcctgttaaaatgagttcggaatgcaaaatcaattttacttgagaac-t |
169 |
Q |
| |
|
|||||||| ||| |||| |||| ||||||| ||| || | |||| ||||||| |||||||| | ||| | |||||||||||| ||||||||||| | |
|
|
| T |
45369227 |
aaattcaatgttacaaatcaattttagaggcaaaagctccgaattctagcttcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacat |
45369128 |
T |
|
| Q |
170 |
ccaaacatgtcaaaatcagttctccttctttgaaatcaattttgacttctccaaaagt |
227 |
Q |
| |
|
|||||||| ||||||||| ||| | || |||||||||||||| || || ||||||| |
|
|
| T |
45369127 |
ccaaacatctcaaaatcaaatctacacctctgaaatcaattttgtctccttcaaaagt |
45369070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 35108172 - 35108130
Alignment:
| Q |
202 |
aaatcaattttgacttctccaaaagttaaaccaaagatacact |
244 |
Q |
| |
|
|||||||||||||| |||| |||||| |||||||||||||||| |
|
|
| T |
35108172 |
aaatcaattttgacctctctaaaagtgaaaccaaagatacact |
35108130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 47596416 - 47596490
Alignment:
| Q |
171 |
caaacatgtcaa-aatcagttctccttctttgaaatcaattttgacttctccaaaagttaaaccaaagatacact |
244 |
Q |
| |
|
|||||||||||| ||||| |||||| |||| ||||||||||||| | |||||||||| |||||| | ||||||| |
|
|
| T |
47596416 |
caaacatgtcaacaatcaattctccacctttaaaatcaattttgattcctccaaaagtgaaaccatacatacact |
47596490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 12401 - 12442
Alignment:
| Q |
145 |
gcaaaatcaattttacttgagaac-tccaaacatgtcaaaat |
185 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
12401 |
gcaaaatcaattctacttgagaacatccaaacatgtcaaaat |
12442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 213
Target Start/End: Original strand, 41517203 - 41517364
Alignment:
| Q |
53 |
aaaaatcggttgaacaataaattcaagattaaaaatgaattgtagaggcgaaaacttcaaattttagcttcctgttaaaatgagttcggaatgcaaaatc |
152 |
Q |
| |
|
|||||| | |||||||||||||| | |||||||| ||||||||||| ||| ||| |||| ||||||| ||| ||| ||||| |||||||||||| |
|
|
| T |
41517203 |
aaaaatggtttgaacaataaatttgaagttaaaaattgattgtagaggcaaaagctttgaattctagcttcacattagaatcagttctgaatgcaaaatc |
41517302 |
T |
|
| Q |
153 |
aattttacttgagaac-tccaaacatgtcaaaatcagttctccttctttgaaatcaattttg |
213 |
Q |
| |
|
| || |||| |||||| || | |||||||||||| |||| | ||||| ||||||||||| |
|
|
| T |
41517303 |
agttctactagagaacatcagagaatgtcaaaatcaattctacatctttagaatcaattttg |
41517364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University