View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19945_low_11 (Length: 244)

Name: NF19945_low_11
Description: NF19945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19945_low_11
NF19945_low_11
[»] chr4 (13 HSPs)
chr4 (17-228)||(39629020-39629231)
chr4 (171-228)||(23359188-23359245)
chr4 (136-228)||(39055248-39055344)
chr4 (180-228)||(52199889-52199937)
chr4 (142-228)||(35382312-35382401)
chr4 (178-228)||(35331971-35332021)
chr4 (171-228)||(822360-822417)
chr4 (180-228)||(38864970-38865018)
chr4 (141-221)||(2396392-2396476)
chr4 (175-221)||(18743264-18743311)
chr4 (174-229)||(51788881-51788936)
chr4 (171-229)||(51175607-51175665)
chr4 (180-212)||(10180603-10180635)
[»] chr6 (4 HSPs)
chr6 (136-228)||(32658367-32658463)
chr6 (141-228)||(33755826-33755917)
chr6 (186-228)||(22281763-22281805)
chr6 (188-228)||(32977370-32977410)
[»] chr1 (21 HSPs)
chr1 (136-225)||(38902053-38902146)
chr1 (123-216)||(52353716-52353814)
chr1 (141-216)||(43822874-43822953)
chr1 (150-228)||(32451714-32451796)
chr1 (146-228)||(47783605-47783691)
chr1 (181-229)||(42401085-42401133)
chr1 (140-211)||(36166995-36167069)
chr1 (142-228)||(27544458-27544548)
chr1 (181-230)||(37583042-37583091)
chr1 (180-228)||(23333846-23333894)
chr1 (167-211)||(23655158-23655202)
chr1 (185-229)||(31827237-31827281)
chr1 (181-229)||(42483697-42483745)
chr1 (180-220)||(42831740-42831780)
chr1 (181-216)||(20558608-20558643)
chr1 (171-229)||(30627084-30627142)
chr1 (171-229)||(32913943-32914001)
chr1 (171-216)||(37073763-37073808)
chr1 (180-224)||(24555822-24555866)
chr1 (181-229)||(33780542-33780590)
chr1 (173-228)||(39864340-39864396)
[»] chr5 (7 HSPs)
chr5 (141-228)||(41520808-41520899)
chr5 (173-229)||(1309745-1309801)
chr5 (171-229)||(4747050-4747108)
chr5 (178-225)||(2375637-2375684)
chr5 (136-221)||(26675421-26675510)
chr5 (136-221)||(26947029-26947118)
chr5 (181-221)||(35463217-35463257)
[»] chr3 (8 HSPs)
chr3 (149-228)||(35539676-35539759)
chr3 (168-229)||(40485069-40485130)
chr3 (180-229)||(41212069-41212118)
chr3 (173-216)||(40242167-40242210)
chr3 (171-225)||(29950766-29950820)
chr3 (171-225)||(29999920-29999974)
chr3 (171-225)||(52393731-52393785)
chr3 (171-228)||(46006059-46006115)
[»] chr8 (15 HSPs)
chr8 (123-228)||(31226397-31226507)
chr8 (143-228)||(14426069-14426158)
chr8 (173-220)||(3628322-3628369)
chr8 (166-225)||(31128532-31128591)
chr8 (175-229)||(2603057-2603111)
chr8 (141-212)||(13628983-13629058)
chr8 (141-212)||(13729395-13729470)
chr8 (171-229)||(43976699-43976757)
chr8 (171-228)||(5535774-5535831)
chr8 (118-211)||(18806491-18806589)
chr8 (173-212)||(6519026-6519065)
chr8 (171-228)||(1155117-1155174)
chr8 (150-228)||(35468419-35468500)
chr8 (171-212)||(37673737-37673778)
chr8 (171-211)||(28557350-28557390)
[»] chr2 (11 HSPs)
chr2 (142-225)||(9583231-9583318)
chr2 (171-216)||(26312569-26312614)
chr2 (171-212)||(34375150-34375191)
chr2 (142-212)||(37347784-37347858)
chr2 (180-228)||(6710861-6710909)
chr2 (171-226)||(4634045-4634100)
chr2 (136-212)||(14772867-14772947)
chr2 (118-216)||(11922042-11922145)
chr2 (138-212)||(28857181-28857259)
chr2 (171-212)||(41000006-41000047)
chr2 (180-216)||(16117901-16117937)
[»] chr7 (10 HSPs)
chr7 (136-228)||(36657830-36657926)
chr7 (171-228)||(4958328-4958385)
chr7 (171-228)||(31330481-31330538)
chr7 (180-229)||(43302108-43302157)
chr7 (141-231)||(46747979-46748073)
chr7 (141-212)||(31322259-31322334)
chr7 (171-229)||(43788610-43788668)
chr7 (171-212)||(19987262-19987303)
chr7 (178-211)||(27334475-27334508)
chr7 (171-228)||(46282111-46282168)
[»] scaffold0040 (1 HSPs)
scaffold0040 (171-211)||(59703-59743)
[»] scaffold0036 (1 HSPs)
scaffold0036 (180-221)||(63644-63685)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 39629020 - 39629231
Alignment:
Q  17 gaaaagtggggttgtggccatgcttgttgggttggtttttcaaatattattacttttatgggtggagataattttattttattttacaaggctaagaatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  39629020 gaaaagtggggttgtggccatgcttgttgggttggtttttcaaatattattgcttttatgggtggagataattttattttattttacaaggctaagaatg 39629119  T
Q  117 caagaccatccacaatgaaacactcattttttggttcttaaatgggtctcataaacatcatttatttataattttttaatagcagtacctaataagcact 216  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||    
T  39629120 caagaccatccgcaatgaaacactcatttttcggttcttaaatgggtctcatacacatcatttatttataattttttaatagtagtatctaataagcact 39629219  T
Q  217 aaatcactccaa 228  Q
    ||||||||||||    
T  39629220 aaatcactccaa 39629231  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 23359245 - 23359188
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    |||||||| ||||||||||||||||||| |||| |||||||||||| |||||||||||    
T  23359245 acatcattcatttataattttttaatagtagtatctaataagcactcaatcactccaa 23359188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 39055344 - 39055248
Alignment:
Q  136 acactcattttttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    |||| ||||||| |||||||||||||||||||    || |||||| | ||||||||||||||||||  ||||||||||||| | |||||| ||||||    
T  39055344 acacccatttttaggttcttaaatgggtctcacgcgtacacatcactcatttataattttttaatattagtacctaataagtattaaatccctccaa 39055248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 52199937 - 52199889
Alignment:
Q  180 atttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    ||||||||||||||||||| ||||||||||||||| | |||||||||||    
T  52199937 atttataattttttaatagtagtacctaataagcattcaatcactccaa 52199889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 35382312 - 35382401
Alignment:
Q  142 attttttggttcttaaatgggtctca---taaacatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    |||||| |||| |||||||||||||    || || ||||| ||||||||||||||||||| ||||| ||||||||| | |||||||||||    
T  35382312 atttttgggttattaaatgggtctccgtgtacacctcattcatttataattttttaatagtagtacataataagcattcaatcactccaa 35382401  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 35331971 - 35332021
Alignment:
Q  178 ttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    ||||||||| ||||||||||| ||||| ||||||||||| |||||||||||    
T  35331971 ttatttatacttttttaatagtagtacataataagcactcaatcactccaa 35332021  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 822360 - 822417
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    |||||||||||||||| ||||||||||| |||| |||||||| ||| |||| ||||||    
T  822360 acatcatttatttatagttttttaatagtagtatctaataagtactcaatccctccaa 822417  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 38864970 - 38865018
Alignment:
Q  180 atttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    ||||||||||||||||||| ||||| ||| ||||||| |||||||||||    
T  38864970 atttataattttttaatagtagtacttaaaaagcacttaatcactccaa 38865018  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 2396476 - 2396392
Alignment:
Q  141 cattttttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataagcactaaatc 221  Q
    ||||||| |||||||||||| ||| ||    || |||||| ||||||||||||| ||||||| ||||||||||||| ||| ||||    
T  2396476 catttttgggttcttaaatgagtcccacgtgtacacatcacttatttataatttgttaatagtagtacctaataagaactcaatc 2396392  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 18743264 - 18743311
Alignment:
Q  175 catttatttataatttt-ttaatagcagtacctaataagcactaaatc 221  Q
    ||||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  18743264 catttatttataatttttttaatagtagtacctaataagcactcaatc 18743311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 51788881 - 51788936
Alignment:
Q  174 tcatttatttataattttttaatagcagtacctaataagcactaaatcactccaat 229  Q
    |||||||||||||||||||||||| ||||| || |||| || | ||||||||||||    
T  51788881 tcatttatttataattttttaataacagtaacttataaacattcaatcactccaat 51788936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 51175665 - 51175607
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaat 229  Q
    |||||| ||||||||||||||||||||  |||||||| |||| ||| ||| ||||||||    
T  51175665 acatcacttatttataattttttaataaaagtacctattaaggactcaatgactccaat 51175607  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 10180603 - 10180635
Alignment:
Q  180 atttataattttttaatagcagtacctaataag 212  Q
    ||||||||||||||||||| |||||||||||||    
T  10180603 atttataattttttaatagtagtacctaataag 10180635  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 32658367 - 32658463
Alignment:
Q  136 acactcattttttggttcttaaatgggtctcat----aaacatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    |||||||||||| |||||||||||||||||||     | |||||| | ||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  32658367 acactcatttttaggttcttaaatgggtctcacgtggacacatcactcatttataattttttaatagtagtacctaataaacactaaatcactccaa 32658463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 33755917 - 33755826
Alignment:
Q  141 cattttttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    |||| ||||||||||||||||||||||    || |||| | |||||||| |||||||||||| ||||||||||||| | | |||||||||||    
T  33755917 cattctttggttcttaaatgggtctcaagtgtatacattacttatttattattttttaatagtagtacctaataagtattcaatcactccaa 33755826  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 22281763 - 22281805
Alignment:
Q  186 aattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  22281763 aattttttaatagtagtacctaataagcactcaatcactccaa 22281805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 32977370 - 32977410
Alignment:
Q  188 ttttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    ||||||||||| ||||||||||||||||| |||| ||||||    
T  32977370 ttttttaatagtagtacctaataagcactcaatccctccaa 32977410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 38902146 - 38902053
Alignment:
Q  136 acactcattttttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataagcactaaatcactc 225  Q
    |||||||||||| |||||||||||||||||||    || | |||| | ||||||||||||||||||| |||||||||||||||||  |||||||    
T  38902146 acactcatttttgggttcttaaatgggtctcacgtgtacatatcactcatttataattttttaatagtagtacctaataagcactcgatcactc 38902053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 52353716 - 52353814
Alignment:
Q  123 catccacaatgaa-acactcattttttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataagcact 216  Q
    ||||||||||||| |||| ||||||  ||| |||||||||||| ||    || |||||| | |||||||||||||||||||||||||||||||||||||    
T  52353716 catccacaatgaagacacacattttagggtacttaaatgggtcccacgtgtacacatcactaatttataattttttaatagcagtacctaataagcact 52353814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 43822953 - 43822874
Alignment:
Q  141 cattttttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataagcact 216  Q
    |||||||||||||||||||||||| ||    || |||||| | ||||||||||||||||||| |||| ||||||||||||    
T  43822953 cattttttggttcttaaatgggtcccacgcgtacacatcactcatttataattttttaatagtagtatctaataagcact 43822874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 32451714 - 32451796
Alignment:
Q  150 gttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    ||||||||||||||||||    || |||||| | ||||||||||||||||||| | ||||||||||||| | |||||||||||    
T  32451714 gttcttaaatgggtctcacgtttacacatcactaatttataattttttaatagtaatacctaataagcattcaatcactccaa 32451796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 47783605 - 47783691
Alignment:
Q  146 tttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    ||||||||||||||||||||||    || ||||||||| |||||||||||||||||  ||||  |||||| |||| |||||||||||    
T  47783605 tttggttcttaaatgggtctcacgtgtacacatcatttgtttataattttttaataatagtatttaataaacactcaatcactccaa 47783691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 42401133 - 42401085
Alignment:
Q  181 tttataattttttaatagcagtacctaataagcactaaatcactccaat 229  Q
    ||||||||||||||||| |||||||||||||||||| | ||||||||||    
T  42401133 tttataattttttaataacagtacctaataagcactcagtcactccaat 42401085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 36167069 - 36166995
Alignment:
Q  140 tcattttttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataa 211  Q
    ||||||||| ||||||||||||||| ||    || |||||||||||||||||||||||||| | ||||||||||||    
T  36167069 tcattttttagttcttaaatgggtcccacatgtacacatcatttatttataattttttaat-gtagtacctaataa 36166995  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 27544548 - 27544458
Alignment:
Q  142 attttttggttcttaaatgggtctcat----aaacatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    |||||||||| ||||||||||||||||    | |||||| | ||||||||||||||||||  || | |||||||||||| |||| ||||||    
T  27544548 attttttggtacttaaatgggtctcatgtgtacacatcactcatttataattttttaataatagcatctaataagcactcaatccctccaa 27544458  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 37583042 - 37583091
Alignment:
Q  181 tttataattttttaatagcagtacctaataagcactaaatcactccaatt 230  Q
    ||||||||||||||||| || ||||||||||||||| | |||||||||||    
T  37583042 tttataattttttaataacaatacctaataagcacttagtcactccaatt 37583091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 23333894 - 23333846
Alignment:
Q  180 atttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    ||||||||||||||||||  ||||| ||||||||||| |||||||||||    
T  23333894 atttataattttttaataatagtacttaataagcactcaatcactccaa 23333846  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 23655158 - 23655202
Alignment:
Q  167 ataaacatcatttatttataattttttaatagcagtacctaataa 211  Q
    |||||||||||||||||||||||||||||||  ||||| ||||||    
T  23655158 ataaacatcatttatttataattttttaataatagtacttaataa 23655202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 31827281 - 31827237
Alignment:
Q  185 taattttttaatagcagtacctaataagcactaaatcactccaat 229  Q
    ||||||||||||| ||||||||||||||||||| |||||| ||||    
T  31827281 taattttttaataacagtacctaataagcactagatcacttcaat 31827237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 42483697 - 42483745
Alignment:
Q  181 tttataattttttaatagcagtacctaataagcactaaatcactccaat 229  Q
    ||||||||||||||||| ||||| |||||||||||| ||||| ||||||    
T  42483697 tttataattttttaataacagtatctaataagcactcaatcattccaat 42483745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 42831780 - 42831740
Alignment:
Q  180 atttataattttttaatagcagtacctaataagcactaaat 220  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  42831780 atttataattttttaatagtagtacctaataagaactaaat 42831740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Complemental strand, 20558643 - 20558608
Alignment:
Q  181 tttataattttttaatagcagtacctaataagcact 216  Q
    ||||||||||||||||| ||||||||||||||||||    
T  20558643 tttataattttttaataacagtacctaataagcact 20558608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 30627084 - 30627142
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaat 229  Q
    |||||| ||||||||||||||||||||  |||||||| |||| ||| ||| ||||||||    
T  30627084 acatcacttatttataattttttaataaaagtacctattaaggacttaatgactccaat 30627142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 32914001 - 32913943
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaat 229  Q
    ||||||||| |||||||||||||||||  |||| |||||| | ||| ||||||||||||    
T  32914001 acatcatttttttataattttttaataatagtatctaataggtactcaatcactccaat 32913943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 37073808 - 37073763
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcact 216  Q
    |||||||||||||||||||||||||||  |||| ||||||| ||||    
T  37073808 acatcatttatttataattttttaatactagtatctaataaacact 37073763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 24555822 - 24555866
Alignment:
Q  180 atttataattttttaatagcagtacctaataagcactaaatcact 224  Q
    ||||||||||||||||||| |||| |||||||||| | |||||||    
T  24555822 atttataattttttaatagtagtatctaataagcattcaatcact 24555866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 33780542 - 33780590
Alignment:
Q  181 tttataattttttaatagcagtacctaataagcactaaatcactccaat 229  Q
    ||||||||||||||||| |||||  ||||||||||| ||||||| ||||    
T  33780542 tttataattttttaataacagtatataataagcactcaatcactacaat 33780590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 39864340 - 39864396
Alignment:
Q  173 atcatttatttataatttt-ttaatagcagtacctaataagcactaaatcactccaa 228  Q
    |||||| |||||||||||| ||||||| |||||||||||| |||| |||| ||||||    
T  39864340 atcattcatttataatttttttaatagaagtacctaataaacacttaatccctccaa 39864396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 41520808 - 41520899
Alignment:
Q  141 cattttttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    ||||||||||||||||||||||| |||    || |||||| |||||||||||||||||||||  |||||||||||| ||| |||| ||||||    
T  41520808 cattttttggttcttaaatgggtttcacgtgtacacatcacttatttataattttttaatagtggtacctaataagaactcaatccctccaa 41520899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 1309745 - 1309801
Alignment:
Q  173 atcatttatttataattttttaatagcagtacctaataagcactaaatcactccaat 229  Q
    |||||||||||||||||||||||||  |||| |||||||||||| ||||||||||||    
T  1309745 atcatttatttataattttttaataatagtatctaataagcactcaatcactccaat 1309801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 4747050 - 4747108
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaat 229  Q
    |||| ||| |||||||||||||||||| || || |||||||||||| ||||||||||||    
T  4747050 acataattcatttataattttttaataacattatctaataagcactcaatcactccaat 4747108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 2375684 - 2375637
Alignment:
Q  178 ttatttataattttttaatagcagtacctaataagcactaaatcactc 225  Q
    ||||||||||||||||||||| |||||||||||| || | ||||||||    
T  2375684 ttatttataattttttaatagtagtacctaataaacattcaatcactc 2375637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 26675421 - 26675510
Alignment:
Q  136 acactcattttttggttcttaaatgggtctcataa----acatcatttatttataattttttaatagcagtacctaataagcactaaatc 221  Q
    |||| ||||||| ||| | |||||||||||||||     |||||| | ||||||||||||||||||| |||| || ||||||||| ||||    
T  26675421 acacacatttttgggtacctaaatgggtctcatatgtacacatcactcatttataattttttaatagtagtatcttataagcacttaatc 26675510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 26947029 - 26947118
Alignment:
Q  136 acactcattttttggttcttaaatgggtctcataa----acatcatttatttataattttttaatagcagtacctaataagcactaaatc 221  Q
    |||| ||||||| ||| | |||||||||||||||     |||||| | ||||||||||||||||||| |||| || ||||||||| ||||    
T  26947029 acacacatttttgggtacctaaatgggtctcatatgtacacatcactcatttataattttttaatagtagtatcttataagcacttaatc 26947118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 35463217 - 35463257
Alignment:
Q  181 tttataattttttaatagcagtacctaataagcactaaatc 221  Q
    |||||||||||||||||| ||||||||||||| ||| ||||    
T  35463217 tttataattttttaatagtagtacctaataagtactcaatc 35463257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 35539759 - 35539676
Alignment:
Q  149 ggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    |||||||||||| ||||||    || |||||||||||||||||||||||||||| |||||||||||| ||||  ||||||||||    
T  35539759 ggttcttaaatgagtctcacgtgtacacatcatttatttataattttttaatagtagtacctaataaacactcgatcactccaa 35539676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 40485069 - 40485130
Alignment:
Q  168 taaacatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaat 229  Q
    |||||||||||  |||||||||||||||||  ||||||||||||||| | || |||||||||    
T  40485069 taaacatcattcttttataattttttaataatagtacctaataagcattcaaccactccaat 40485130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 41212118 - 41212069
Alignment:
Q  180 atttataattttttaatagcagtacctaataagcactaaatcactccaat 229  Q
    |||||||||||| |||||| ||||||||||||||| |||||| |||||||    
T  41212118 atttataattttgtaatagtagtacctaataagcagtaaatccctccaat 41212069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 40242167 - 40242210
Alignment:
Q  173 atcatttatttataattttttaatagcagtacctaataagcact 216  Q
    |||| ||||||||||||||||||||| | |||||||||||||||    
T  40242167 atcacttatttataattttttaatagtaatacctaataagcact 40242210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 29950766 - 29950820
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcactaaatcactc 225  Q
    |||||| | ||||||| ||||||||||| |||| |||||||||||| ||||||||    
T  29950766 acatcactcatttatatttttttaatagtagtatctaataagcactcaatcactc 29950820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 29999920 - 29999974
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcactaaatcactc 225  Q
    |||||| | ||||||| ||||||||||| |||| |||||||||||| ||||||||    
T  29999920 acatcactcatttatatttttttaatagtagtatctaataagcactcaatcactc 29999974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 52393785 - 52393731
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcactaaatcactc 225  Q
    ||||||||||||||||||||||||||| || || ||||||| || | ||||||||    
T  52393785 acatcatttatttataattttttaataacaatatctaataaacattcaatcactc 52393731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 46006059 - 46006115
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    |||||| | ||||||||||||||||||| |||||||||||| || | |||||||||||    
T  46006059 acatcactcatttataattttttaatagtagtacctaataa-cattcaatcactccaa 46006115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 31226397 - 31226507
Alignment:
Q  123 catccacaatg-aaacactcattttttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataagcacta 217  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| |||    || |||||| | ||||||||||||||||||| ||||||||||||  |||     
T  31226397 catccacaatggaaacacccatttttgggttcttaaatgggtgtcacatgtacacatcactcatttataattttttaatagtagtacctaataaatactc 31226496  T
Q  218 aatcactccaa 228  Q
    || ||||||||    
T  31226497 aaacactccaa 31226507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 14426069 - 14426158
Alignment:
Q  143 ttttttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    |||||| ||||||||||||||| ||    || |||||| || |||||||||||||||| ||| |||||||||| |||| |||||||||||    
T  14426069 ttttttagttcttaaatgggtcacacgtgtacacatcacttctttataattttttaattgcaatacctaataaacactcaatcactccaa 14426158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 3628369 - 3628322
Alignment:
Q  173 atcatttatttataattttttaatagcagtacctaataagcactaaat 220  Q
    |||||||||||||||||||||||||| ||| | |||||||||||||||    
T  3628369 atcatttatttataattttttaatagtagtgcttaataagcactaaat 3628322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 31128532 - 31128591
Alignment:
Q  166 cataaacatcatttatttataattttttaatagcagtacctaataagcactaaatcactc 225  Q
    |||| |||||| | ||||||||||||||||||| ||||||||||||||| | ||||||||    
T  31128532 catacacatcactcatttataattttttaatagtagtacctaataagcattcaatcactc 31128591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 2603057 - 2603111
Alignment:
Q  175 catttatttataattttttaatagcagtacctaataagcactaaatcactccaat 229  Q
    |||||||||||||||||||||||| |||| |||||||| ||| |||| |||||||    
T  2603057 catttatttataattttttaatagtagtatctaataagtactcaatccctccaat 2603111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 13628983 - 13629058
Alignment:
Q  141 cattttttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataag 212  Q
    |||||||  ||||||||||||||||||    || |||||||| ||||||||||||||||||| |||| ||||||||    
T  13628983 catttttgagttcttaaatgggtctcacatgtacacatcattcatttataattttttaatagtagtatctaataag 13629058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 13729395 - 13729470
Alignment:
Q  141 cattttttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataag 212  Q
    |||||||  ||||||||||||||||||    || |||||||| ||||||||||||||||||| |||| ||||||||    
T  13729395 catttttgagttcttaaatgggtctcacatgtacacatcattcatttataattttttaatagtagtatctaataag 13729470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 43976757 - 43976699
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaat 229  Q
    |||||||||||||||||||||||||||  |||||||| |||| ||| ||| ||||||||    
T  43976757 acatcatttatttataattttttaataaaagtacctattaaggactcaatgactccaat 43976699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 5535774 - 5535831
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    |||||| | ||||||||||||||||||  ||||||| ||||||||| |||||||||||    
T  5535774 acatcactcatttataattttttaatattagtaccttataagcactcaatcactccaa 5535831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 18806491 - 18806589
Alignment:
Q  118 aagaccatccacaatgaa-acactcattttttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataa 211  Q
    |||| |||| |||||||| |||||||||||| | || |||||||||| |||    || |||||| ||||||||||||||||||||| |||| |||||||    
T  18806491 aagagcatctacaatgaagacactcatttttggatttttaaatgggtttcacgtgtacacatcacttatttataattttttaatagtagtatctaataa 18806589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 6519026 - 6519065
Alignment:
Q  173 atcatttatttataattttttaatagcagtacctaataag 212  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  6519026 atcacttatttataattttttaatagtagtacctaataag 6519065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 1155117 - 1155174
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    |||||| | ||||||||||||||||||| |||| |||||||||| | |||| ||||||    
T  1155117 acatcactcatttataattttttaatagtagtatctaataagcattcaatccctccaa 1155174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 35468500 - 35468419
Alignment:
Q  150 gttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    ||||||||||||||||||    || |||||| | ||||||||||||| ||||||||||| ||||||| ||| |||| ||||||    
T  35468500 gttcttaaatgggtctcacgcgtacacatcactcatttataattttt-aatagcagtacttaataagtactcaatccctccaa 35468419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 37673737 - 37673778
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataag 212  Q
    |||||| | ||||||||||||||||||| |||||||||||||    
T  37673737 acatcactcatttataattttttaatagtagtacctaataag 37673778  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 28557390 - 28557350
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataa 211  Q
    |||||| | ||||||||||||||||||| ||||||||||||    
T  28557390 acatcactaatttataattttttaatagtagtacctaataa 28557350  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 9583318 - 9583231
Alignment:
Q  142 attttttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataagcactaaatcactc 225  Q
    |||||| |||||||||||| ||||||    ||  ||||| ||||||||||||||||||||| |||| |||||||||||| ||||||||    
T  9583318 atttttgggttcttaaatgagtctcacgtgtacgcatcacttatttataattttttaatagtagtatctaataagcactcaatcactc 9583231  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 26312614 - 26312569
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcact 216  Q
    |||||| | ||||||||||||||||||| |||||||||||||||||    
T  26312614 acatcactcatttataattttttaatagtagtacctaataagcact 26312569  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 34375191 - 34375150
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataag 212  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  34375191 acatcacttatttataattttttaatagtagtacctaataag 34375150  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 37347784 - 37347858
Alignment:
Q  142 attttttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataag 212  Q
    |||||| ||||||||||||| |||||    || |||||||||||||||||||||||||||| | || ||||||||    
T  37347784 atttttgggttcttaaatggatctcacgtgtacacatcatttatttataattttttaatagtaatatctaataag 37347858  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 6710861 - 6710909
Alignment:
Q  180 atttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    ||||||||||||||||||| |||| |||||||||||| | |||||||||    
T  6710861 atttataattttttaatagtagtatctaataagcactcagtcactccaa 6710909  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 4634100 - 4634045
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcactaaatcactcc 226  Q
    ||||||||| | |||||||||||||||  ||||||||||||| ||| |||||||||    
T  4634100 acatcatttttgtataattttttaataatagtacctaataagaactcaatcactcc 4634045  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 14772867 - 14772947
Alignment:
Q  136 acactcattttttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataag 212  Q
    |||| |||||||  ||||||||||||||||||    || |||||||| |||||||||||||||| |  |||||||||||||    
T  14772867 acacccatttttgagttcttaaatgggtctcacgcgtacacatcattcatttataattttttaacaatagtacctaataag 14772947  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 216
Target Start/End: Complemental strand, 11922145 - 11922042
Alignment:
Q  118 aagaccatccacaatgaa-acactcattttttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataag 212  Q
    |||| ||||||||||| | ||||||||||||   | |||||||||||||||    || |||| | | ||||||||||||||||||| ||||||||| |||    
T  11922145 aagagcatccacaatggagacactcatttttaattacttaaatgggtctcacgtgtacacattactcatttataattttttaatagtagtacctaaaaag 11922046  T
Q  213 cact 216  Q
    ||||    
T  11922045 cact 11922042  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 28857259 - 28857181
Alignment:
Q  138 actcattttttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataag 212  Q
    |||||||||||||| ||||||||||||| |    || |||| ||||||||||||||||||| ||| | ||| |||||||    
T  28857259 actcattttttggtacttaaatgggtcttacttatacacataatttatttataattttttagtagtaatacttaataag 28857181  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 41000047 - 41000006
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataag 212  Q
    |||||||||||||||| |||||||| ||||||| ||||||||    
T  41000047 acatcatttatttatagttttttaaaagcagtatctaataag 41000006  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 16117901 - 16117937
Alignment:
Q  180 atttataattttttaatagcagtacctaataagcact 216  Q
    |||||||||||||||||| || |||||||||||||||    
T  16117901 atttataattttttaatatcaatacctaataagcact 16117937  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 36657830 - 36657926
Alignment:
Q  136 acactcattttttggttcttaaatgggtctcat----aaacatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    |||| ||||||| ||||||||||||||||||||    | ||||   | ||||||||||||||||||| | || |||||||||||| |||||||||||    
T  36657830 acacccatttttgggttcttaaatgggtctcatgtgtacacattgctcatttataattttttaatagtactatctaataagcactcaatcactccaa 36657926  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 4958385 - 4958328
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    |||||||| ||||||||||||||||||| |||| ||||||| |||| |||| ||||||    
T  4958385 acatcattcatttataattttttaatagtagtatctaataaacactcaatccctccaa 4958328  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 31330538 - 31330481
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    |||||| | ||||||||||||||||| | ||||||||||||||||| |||| ||||||    
T  31330538 acatcactcatttataattttttaatggtagtacctaataagcactcaatccctccaa 31330481  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 43302108 - 43302157
Alignment:
Q  180 atttataattttttaatagcagtacctaataagcactaaatcactccaat 229  Q
    ||||||||||||||||||| ||||||||||||  ||| ||||||||||||    
T  43302108 atttataattttttaatagtagtacctaataaatactcaatcactccaat 43302157  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 46747979 - 46748073
Alignment:
Q  141 cattttttggttcttaaatgggtctca----taaacatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaattc 231  Q
    ||||||| |||| ||||||||||| ||    || |||||| ||||||||||||||||||||| || |||||||||| ||| |||| ||| |||||    
T  46747979 catttttgggtttttaaatgggtcccacttatacacatcacttatttataattttttaatagtagcacctaataagaactcaatccctcaaattc 46748073  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 31322259 - 31322334
Alignment:
Q  141 cattttttggttcttaaatgggtctcataa----acatcatttatttataattttttaatagcagtacctaataag 212  Q
    ||||||||||| |||||||||||| ||||     |||||| | |||||||||||||||| || |||||||||||||    
T  31322259 cattttttggtacttaaatgggtcacatatgtacacatcactcatttataattttttaacagtagtacctaataag 31322334  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 43788668 - 43788610
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaat 229  Q
    |||||| ||||||||||||||||||||  |||||||| |||| ||| ||| ||||||||    
T  43788668 acatcacttatttataattttttaataaaagtacctattaaggactcaatgactccaat 43788610  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 19987303 - 19987262
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataag 212  Q
    |||||||| ||||||||||||||||||| ||||| |||||||    
T  19987303 acatcattcatttataattttttaatagtagtacataataag 19987262  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 27334508 - 27334475
Alignment:
Q  178 ttatttataattttttaatagcagtacctaataa 211  Q
    ||||||||||||||||||||| ||||||||||||    
T  27334508 ttatttataattttttaatagtagtacctaataa 27334475  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 46282111 - 46282168
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataagcactaaatcactccaa 228  Q
    ||||| || ||||||||||||||||||||  |||||||||| ||||| ||| ||||||    
T  46282111 acatcgttaatttataattttttaatagcgatacctaataaacactagatccctccaa 46282168  T

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Target: scaffold0040 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 59743 - 59703
Alignment:
Q  171 acatcatttatttataattttttaatagcagtacctaataa 211  Q
    |||||||||||||||||||||||||||||| || |||||||    
T  59743 acatcatttatttataattttttaatagcaatatctaataa 59703  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 63685 - 63644
Alignment:
Q  180 atttataattttttaatagcagtacctaataagcactaaatc 221  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||    
T  63685 atttataattttttaatagtagtacctaataaggactcaatc 63644  T

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