View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19945_low_2 (Length: 650)
Name: NF19945_low_2
Description: NF19945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19945_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 25 - 451
Target Start/End: Original strand, 2675730 - 2676137
Alignment:
| Q |
25 |
tttagtcacattagtccttaataaaattaaaattatttcaaaagttcctgaatgtaatctctataaaatataatcttgcataaattatgtaccaactaga |
124 |
Q |
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| T |
2675730 |
tttagtcacattagttctta-taaaatgaaaattatttcaaaagttcctgaatgtaatctctatgtaatataatcttgcataaattatgtactaactaga |
2675828 |
T |
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| Q |
125 |
tgcttcaaaaatataacttcatttgatttctgtaaataaataatagttagctccttgattaattggttgtatcaactgtgcctaagatctgtggctcaaa |
224 |
Q |
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| T |
2675829 |
tgcttcaaaaatataacttcatttgatttctgtaaattaataatagttagctccttgattaattggttgtttcaactgtgcctaagatctgtgtctcaaa |
2675928 |
T |
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| Q |
225 |
aacttatggatagtattacattcaataggaaatatctattgtaagtgcttttgtagctggaggtttcttctaactggaggtgtcttctaatgttagaaga |
324 |
Q |
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| T |
2675929 |
aacttatggatcgtattacggtcaatagtaaatatctattataagtgcttttg-----------------taacaggaggtttcttcgaatgttagaaga |
2676011 |
T |
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| Q |
325 |
aacctccagtttactctaaaacaaaaagaatatatgaatttttattcacttttttatctattagttttctaatcaatcttaagttggatttgtcttttaa |
424 |
Q |
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| T |
2676012 |
aaccttcagtttactctaaaacaaaaaaaatatatggatttttatttac-tttttatctattagttttctaatcaatcttaagttggatttgtcttttaa |
2676110 |
T |
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| Q |
425 |
tttagaaataaaaaattaccgatgtgg |
451 |
Q |
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| T |
2676111 |
tttagaaataaaaaattaccgatgtgg |
2676137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 485 - 632
Target Start/End: Original strand, 2676344 - 2676487
Alignment:
| Q |
485 |
gatttccaaggacaggggtttgttaacccaggttcagatgtaagataagtgtaatatagccggaccgatgattgttctaccaaagaatgtaagcctgatt |
584 |
Q |
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| T |
2676344 |
gatttccaaggacaggagtttgttaacccaggttcagacataaggtaagtgt----tagcccgaccgatgattgttccaccaaagaatataaacctgatt |
2676439 |
T |
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| Q |
585 |
ttctagaaacattcgatttttaatggacctcattagtcatttgggttc |
632 |
Q |
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| T |
2676440 |
ctttagaaggattcgatttttagtgaacctcattagtcatttgggttc |
2676487 |
T |
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