View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19945_low_4 (Length: 502)

Name: NF19945_low_4
Description: NF19945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19945_low_4
NF19945_low_4
[»] chr1 (42 HSPs)
chr1 (1-211)||(48947215-48947425)
chr1 (105-205)||(38172662-38172762)
chr1 (104-211)||(33791727-33791834)
chr1 (104-251)||(16113889-16114039)
chr1 (107-211)||(39973903-39974007)
chr1 (108-181)||(40286899-40286972)
chr1 (113-211)||(35259043-35259141)
chr1 (108-185)||(4040930-4041007)
chr1 (104-181)||(49478854-49478931)
chr1 (104-176)||(31652668-31652740)
chr1 (104-211)||(48874-48981)
chr1 (112-211)||(290602-290701)
chr1 (109-212)||(51904562-51904665)
chr1 (114-196)||(40053319-40053401)
chr1 (138-211)||(31043012-31043085)
chr1 (113-198)||(44461599-44461683)
chr1 (123-211)||(3047878-3047966)
chr1 (104-176)||(12148287-12148359)
chr1 (111-212)||(1656446-1656548)
chr1 (114-172)||(40203076-40203134)
chr1 (125-211)||(42573778-42573864)
chr1 (108-196)||(24075125-24075214)
chr1 (111-211)||(46804819-46804919)
chr1 (107-182)||(30548313-30548387)
chr1 (105-176)||(40377088-40377159)
chr1 (122-187)||(9931810-9931875)
chr1 (113-198)||(24034081-24034166)
chr1 (122-171)||(47364049-47364098)
chr1 (111-185)||(759221-759296)
chr1 (121-176)||(50222612-50222667)
chr1 (108-198)||(290841-290931)
chr1 (122-172)||(5115612-5115662)
chr1 (108-177)||(30350911-30350978)
chr1 (106-164)||(31745397-31745455)
chr1 (121-171)||(34596125-34596175)
chr1 (105-211)||(35543392-35543498)
chr1 (106-164)||(44719239-44719297)
chr1 (121-187)||(45753485-45753551)
chr1 (122-171)||(9590918-9590967)
chr1 (136-181)||(26700290-26700335)
chr1 (103-187)||(39807558-39807643)
chr1 (122-158)||(42564262-42564298)
[»] chr2 (38 HSPs)
chr2 (111-228)||(12848467-12848583)
chr2 (114-212)||(30523013-30523111)
chr2 (123-211)||(33454979-33455067)
chr2 (125-211)||(24389632-24389718)
chr2 (104-208)||(431621-431726)
chr2 (111-187)||(32066757-32066833)
chr2 (113-208)||(42342487-42342581)
chr2 (113-211)||(33068540-33068638)
chr2 (114-212)||(33634796-33634894)
chr2 (130-198)||(565706-565774)
chr2 (122-212)||(12205529-12205620)
chr2 (113-228)||(3074075-3074187)
chr2 (109-211)||(6411367-6411469)
chr2 (137-211)||(8964403-8964477)
chr2 (114-212)||(9049148-9049246)
chr2 (122-211)||(6334678-6334767)
chr2 (109-188)||(28695605-28695685)
chr2 (122-176)||(7271826-7271880)
chr2 (114-156)||(33898643-33898685)
chr2 (107-172)||(5961954-5962019)
chr2 (141-210)||(12762896-12762965)
chr2 (120-181)||(18043881-18043942)
chr2 (104-212)||(40874825-40874934)
chr2 (109-212)||(3666431-3666534)
chr2 (125-228)||(6083911-6084013)
chr2 (130-181)||(15806054-15806105)
chr2 (143-198)||(30869589-30869644)
chr2 (122-207)||(8333580-8333665)
chr2 (113-194)||(10183218-10183299)
chr2 (121-158)||(11364702-11364739)
chr2 (123-172)||(13538446-13538495)
chr2 (106-211)||(29685694-29685799)
chr2 (121-158)||(32787586-32787623)
chr2 (121-197)||(6761731-6761807)
chr2 (122-158)||(21004775-21004811)
chr2 (108-212)||(21277563-21277666)
chr2 (160-212)||(30822764-30822816)
chr2 (107-171)||(44941072-44941136)
[»] chr7 (23 HSPs)
chr7 (104-211)||(8237961-8238068)
chr7 (113-211)||(19620003-19620101)
chr7 (104-198)||(34299731-34299825)
chr7 (103-211)||(5482395-5482502)
chr7 (104-251)||(5907795-5907941)
chr7 (131-212)||(24299146-24299227)
chr7 (104-211)||(43492189-43492297)
chr7 (104-211)||(24610826-24610933)
chr7 (114-212)||(38988716-38988816)
chr7 (120-228)||(39316297-39316404)
chr7 (116-198)||(7432660-7432743)
chr7 (113-211)||(44452038-44452137)
chr7 (108-211)||(23682444-23682546)
chr7 (135-211)||(41150034-41150110)
chr7 (104-157)||(47305514-47305567)
chr7 (124-172)||(18926377-18926425)
chr7 (103-211)||(26871782-26871890)
chr7 (131-183)||(32699395-32699447)
chr7 (106-211)||(39241581-39241687)
chr7 (104-172)||(9097683-9097751)
chr7 (114-198)||(31902747-31902831)
chr7 (122-198)||(40722383-40722459)
chr7 (119-183)||(47507649-47507713)
[»] chr8 (34 HSPs)
chr8 (104-211)||(12002278-12002385)
chr8 (113-211)||(1876479-1876577)
chr8 (109-212)||(11533242-11533345)
chr8 (104-181)||(36907841-36907918)
chr8 (113-211)||(31844214-31844313)
chr8 (113-212)||(40628964-40629063)
chr8 (122-212)||(44220716-44220806)
chr8 (104-181)||(14016855-14016932)
chr8 (104-212)||(30486619-30486728)
chr8 (120-195)||(1445137-1445213)
chr8 (136-212)||(18842275-18842351)
chr8 (113-212)||(7627844-7627943)
chr8 (104-211)||(39594477-39594584)
chr8 (104-198)||(41959969-41960064)
chr8 (114-212)||(2376726-2376824)
chr8 (107-187)||(14453716-14453794)
chr8 (114-212)||(32271180-32271278)
chr8 (114-211)||(38047607-38047705)
chr8 (113-181)||(35501064-35501133)
chr8 (113-172)||(34722774-34722834)
chr8 (123-211)||(44907229-44907318)
chr8 (125-173)||(7931764-7931812)
chr8 (115-211)||(38019418-38019513)
chr8 (114-198)||(39691112-39691196)
chr8 (114-169)||(26014752-26014807)
chr8 (122-172)||(35592489-35592539)
chr8 (162-211)||(30158108-30158157)
chr8 (107-156)||(32133686-32133735)
chr8 (105-166)||(44960519-44960580)
chr8 (114-187)||(1773799-1773874)
chr8 (113-184)||(5020051-5020120)
chr8 (113-212)||(8349714-8349813)
chr8 (135-207)||(20522959-20523031)
chr8 (114-154)||(33285923-33285963)
[»] chr6 (12 HSPs)
chr6 (16-92)||(33619252-33619328)
chr6 (104-187)||(29716752-29716836)
chr6 (111-211)||(10364754-10364854)
chr6 (104-196)||(23344597-23344690)
chr6 (130-211)||(13445745-13445826)
chr6 (105-198)||(34552311-34552405)
chr6 (103-177)||(21130742-21130816)
chr6 (123-176)||(31702747-31702800)
chr6 (107-198)||(34552494-34552585)
chr6 (105-172)||(1479081-1479148)
chr6 (114-156)||(26187452-26187494)
chr6 (113-181)||(354576-354644)
[»] chr4 (34 HSPs)
chr4 (105-211)||(53261569-53261675)
chr4 (104-213)||(40252665-40252773)
chr4 (123-212)||(45743325-45743414)
chr4 (123-211)||(36876064-36876152)
chr4 (125-205)||(25042743-25042823)
chr4 (105-212)||(35153261-35153369)
chr4 (104-187)||(37461460-37461544)
chr4 (143-211)||(49951717-49951785)
chr4 (123-211)||(52650697-52650785)
chr4 (105-212)||(53622313-53622421)
chr4 (103-178)||(20022234-20022309)
chr4 (122-196)||(21687591-21687666)
chr4 (104-171)||(49446581-49446648)
chr4 (113-228)||(17970805-17970917)
chr4 (114-172)||(41370166-41370224)
chr4 (148-213)||(23136539-23136604)
chr4 (134-193)||(44570122-44570181)
chr4 (94-152)||(18939846-18939904)
chr4 (113-181)||(3179003-3179072)
chr4 (108-193)||(38354473-38354558)
chr4 (123-251)||(47937834-47937962)
chr4 (124-211)||(4391979-4392067)
chr4 (104-152)||(32175502-32175550)
chr4 (114-181)||(7996754-7996816)
chr4 (120-175)||(24753975-24754030)
chr4 (119-166)||(36721589-36721636)
chr4 (107-181)||(39767248-39767323)
chr4 (105-164)||(41468142-41468201)
chr4 (130-175)||(19652680-19652725)
chr4 (36-81)||(31295885-31295930)
chr4 (113-177)||(49795189-49795254)
chr4 (130-198)||(2063499-2063567)
chr4 (120-172)||(25115267-25115319)
chr4 (123-211)||(31262927-31263014)
[»] chr3 (25 HSPs)
chr3 (105-211)||(48551051-48551157)
chr3 (114-251)||(45757899-45758037)
chr3 (114-211)||(20821314-20821412)
chr3 (114-187)||(14146135-14146208)
chr3 (104-211)||(24313562-24313670)
chr3 (113-211)||(12140156-12140255)
chr3 (113-186)||(33072108-33072181)
chr3 (111-251)||(3026979-3027121)
chr3 (104-211)||(25317816-25317923)
chr3 (104-187)||(1511370-1511453)
chr3 (135-212)||(37388417-37388494)
chr3 (130-211)||(54911212-54911293)
chr3 (105-145)||(39651994-39652034)
chr3 (104-171)||(18399147-18399214)
chr3 (119-193)||(41750755-41750829)
chr3 (114-175)||(1829243-1829304)
chr3 (104-210)||(22772872-22772979)
chr3 (121-172)||(25548203-25548254)
chr3 (137-211)||(29612031-29612106)
chr3 (131-212)||(45584343-45584422)
chr3 (113-171)||(52340118-52340176)
chr3 (113-158)||(27968262-27968307)
chr3 (103-187)||(46725692-46725776)
chr3 (104-164)||(34758987-34759047)
chr3 (104-164)||(54911986-54912046)
[»] chr5 (27 HSPs)
chr5 (103-213)||(14309071-14309184)
chr5 (113-212)||(21259415-21259514)
chr5 (108-211)||(38594923-38595026)
chr5 (349-477)||(29791991-29792125)
chr5 (109-193)||(16636656-16636740)
chr5 (105-212)||(26453630-26453736)
chr5 (107-212)||(22601785-22601890)
chr5 (131-212)||(26686667-26686748)
chr5 (131-212)||(26956398-26956479)
chr5 (106-198)||(27325814-27325906)
chr5 (106-212)||(17774272-17774378)
chr5 (130-211)||(4695083-4695164)
chr5 (104-176)||(22473481-22473553)
chr5 (136-211)||(12221448-12221523)
chr5 (107-184)||(3263785-3263862)
chr5 (104-160)||(5758624-5758680)
chr5 (107-171)||(10051781-10051845)
chr5 (111-183)||(27794854-27794926)
chr5 (106-177)||(26432307-26432378)
chr5 (109-171)||(8247118-8247180)
chr5 (104-164)||(5356286-5356346)
chr5 (114-198)||(10228342-10228426)
chr5 (108-187)||(28207696-28207776)
chr5 (104-172)||(31672462-31672530)
chr5 (130-172)||(31889666-31889708)
chr5 (114-211)||(14042474-14042571)
chr5 (106-198)||(28639576-28639669)
[»] scaffold0236 (1 HSPs)
scaffold0236 (103-211)||(19578-19686)
[»] scaffold0010 (1 HSPs)
scaffold0010 (130-211)||(26712-26793)
[»] scaffold0037 (1 HSPs)
scaffold0037 (108-212)||(35273-35376)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 48947425 - 48947215
Alignment:
Q  1 ttgcacatacaatgcatatttatatagtagaagaggtagtttattaaccaccatttcctaactccataaaactactaactaactatatataaatatggga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48947425 ttgcacatacaatgcatatttatatagtagaagaggtagtttattaaccaccatttcctaactccataaaactactaactaactatatataaatatggga 48947326  T
Q  101 aatggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| |    
T  48947325 aatggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattgaaaactttgacatttttaaaaaataat 48947226  T
Q  201 taattaattta 211  Q
    || ||||||||    
T  48947225 tacttaattta 48947215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 105 - 205
Target Start/End: Complemental strand, 38172762 - 38172662
Alignment:
Q  105 gggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaat 204  Q
    ||||||| ||||||||||||||||| ||||||||||| ||| |||||||||||||||||||  |||||||||||||| ||||| |||||||||| |||||    
T  38172762 gggcacttgttaaggactttaaatgataactttttataaaagtttgtgtaatcagtgcattaaaaattaaaaacttttacatttttaaagaataattaat 38172663  T
Q  205 t 205  Q
    |    
T  38172662 t 38172662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 33791727 - 33791834
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaa 203  Q
    |||||||| ||||| |||||||||| |||||||||||||||| ||||||||||| ||| |||||||||| |||| ||||||||| | |||||||| |||     
T  33791727 ggggcactggttaaagactttaaatagtaactttttatgaaagtttgtgtaatcggtgtattggaaattgaaaaatttgacattttaaaagaataattac 33791826  T
Q  204 ttaattta 211  Q
    ||||||||    
T  33791827 ttaattta 33791834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 104 - 251
Target Start/End: Complemental strand, 16114039 - 16113889
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaacttttt--atgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagtt 201  Q
    ||||||||| ||||||   |||||||||||||||||  |||||| |||||||||||||||||||||||||| |||||||||||||| | ||| |||| ||    
T  16114039 ggggcactacttaaggggcttaaatggtaactttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaactttgacattttgaaaaaataatt 16113940  T
Q  202 aattaatttaattatgcttacagagtggtcagga--cactcgttaacaagac 251  Q
    | ||||| | | |||||||| ||||||  | |||  ||||||||||||||||    
T  16113939 acttaatat-agtatgcttaaagagtgccccggaggcactcgttaacaagac 16113889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 39974007 - 39973903
Alignment:
Q  107 gcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaatta 206  Q
    ||||| ||||| ||||||||||| ||||||||||||||| ||||| |||||| ||||||| ||||| |||||||| ||||| | |||||||| ||| |||    
T  39974007 gcactggttaaagactttaaatgataactttttatgaaagtttgtataatcaatgcattgaaaattgaaaactttaacattttaaaagaataattactta 39973908  T
Q  207 attta 211  Q
    |||||    
T  39973907 attta 39973903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 40286972 - 40286899
Alignment:
Q  108 cactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaacttt 181  Q
    ||||||||||| ||||||||| |||||||||||| ||| |||||||| ||||||||||||||||| ||||||||    
T  40286972 cactagttaagaactttaaatagtaactttttataaaagtttgtgtactcagtgcattggaaattgaaaacttt 40286899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 35259043 - 35259141
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    ||||||||||||||||||||||||||||  ||  | ||||||||||| |||||||||||| |||||||| ||||| ||||| |||| ||  ||||||||    
T  35259043 gttaaggactttaaatggtaactttttacaaatgtgtgtgtaatcagcgcattggaaattgaaaacttttacatttttaaaaaataatttcttaattta 35259141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 4041007 - 4040930
Alignment:
Q  108 cactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgaca 185  Q
    |||||||||||||||||||||| ||||||||| ||||| |||||||||| |||  |||| ||||| ||||||||||||    
T  4041007 cactagttaaggactttaaatgataactttttgtgaaagtttgtgtaataagtatattgaaaattgaaaactttgaca 4040930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 49478931 - 49478854
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaacttt 181  Q
    |||||||| ||||||||  |||||||||||||||| ||  || |||||||||||||||||||||||||| ||||||||    
T  49478931 ggggcactggttaaggaacttaaatggtaacttttcatagaagtttgtgtaatcagtgcattggaaattgaaaacttt 49478854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 31652740 - 31652668
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaa 176  Q
    |||||||||||||||| |||||||||||||| | | |||||||| |||||||||| ||||| |||||||||||    
T  31652740 ggggcactagttaagggctttaaatggtaacctatcatgaaaatatgtgtaatcattgcatcggaaattaaaa 31652668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 48874 - 48981
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaa 203  Q
    ||||||||  ||||| || ||| || |||| ||||||||||| ||||||||||| |||||||| ||||| |||||||| ||||| || ||||||| |||     
T  48874 ggggcactcattaagaaccttacatagtaaatttttatgaaagtttgtgtaatcggtgcattgaaaattgaaaacttttacatttttcaagaataattac 48973  T
Q  204 ttaattta 211  Q
    ||||||||    
T  48974 ttaattta 48981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 290701 - 290602
Alignment:
Q  112 agttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    ||||||| || ||||||  |||||||| ||  || |||||||||||||||||||| ||||| |||||||||||||| | |||||||| ||| ||||||||    
T  290701 agttaagaacgttaaataataacttttcattgaagtttgtgtaatcagtgcattgtaaattgaaaactttgacattttaaaagaataattacttaattta 290602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 109 - 212
Target Start/End: Original strand, 51904562 - 51904665
Alignment:
Q  109 actagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaat 208  Q
    ||||||||||||| |||||| | || ||||||||||| |||||||| |  | |||||||||||| |||||||| ||||| | |||||||| ||| |||||    
T  51904562 actagttaaggaccttaaattgcaattttttatgaaagtttgtgtagttggggcattggaaattgaaaactttaacattttaaaagaataattacttaat 51904661  T
Q  209 ttaa 212  Q
    ||||    
T  51904662 ttaa 51904665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 40053401 - 40053319
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaa 196  Q
    |||| ||| |||||| |||||||||||||||| |||||||||| | || |||| ||||| |||||||||||||| ||||||||    
T  40053401 ttaatgaccttaaatagtaactttttatgaaagtttgtgtaataaatgtattgaaaattgaaaactttgacatttttaaagaa 40053319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 31043085 - 31043012
Alignment:
Q  138 ttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||||||| |||||||||||| ||||||| ||||| |||||||||||||| ||||| |||| ||| ||||||||    
T  31043085 ttatgaaagtttgtgtaatcaatgcattgaaaattgaaaactttgacatttttaaaaaataattacttaattta 31043012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 44461683 - 44461599
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaata 198  Q
    ||||| || ||||||| |||| |||||||||||||||||||||| | ||||||  |||||||||||||||||||| | ||||||||    
T  44461683 gttaaagattttaaatagtaaatttttatgaaaatttgtgtaatta-tgcattaaaaattaaaaactttgacattttaaaagaata 44461599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 3047966 - 3047878
Alignment:
Q  123 ttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||||| |||| ||||||||||| ||||| |||||| ||||||||||||  |||| ||||||||| |||||||| | ||| ||||||||    
T  3047966 ttaaatagtaattttttatgaaagtttgtttaatcaatgcattggaaatcgaaaaatttgacatttttaaagaacaattacttaattta 3047878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 12148287 - 12148359
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaa 176  Q
    |||||||||||||| | |||||||||||||||| | |||||||| ||||||| || |||||||||||| ||||    
T  12148287 ggggcactagttaaagtctttaaatggtaacttatcatgaaaatatgtgtaaccaatgcattggaaatcaaaa 12148359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 111 - 212
Target Start/End: Complemental strand, 1656548 - 1656446
Alignment:
Q  111 tagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcag-tgcattggaaattaaaaactttgacattattaaagaatagttaattaatt 209  Q
    ||||||| ||| ||||||  |||||||||||||||| ||||||| | |  ||||||||||||| |||| ||||||||| ||||| |||| ||| ||||||    
T  1656548 tagttaatgaccttaaataataactttttatgaaaaattgtgtattaaaatgcattggaaattgaaaattttgacatttttaaaaaataattatttaatt 1656449  T
Q  210 taa 212  Q
    |||    
T  1656448 taa 1656446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 40203076 - 40203134
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatt 172  Q
    |||||| ||||||||||||||||| | ||||||| |||||||||| |||||||||||||    
T  40203076 ttaaggtctttaaatggtaactttgtctgaaaatatgtgtaatcaatgcattggaaatt 40203134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 42573778 - 42573864
Alignment:
Q  125 aaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||||||||||||||||  || ||||| |||||||||||||| ||||| ||||| || ||||| | |||||||| ||| ||||||||    
T  42573778 aaatggtaactttttattgaagtttgtataatcagtgcattgaaaattgaaaaccttaacattttaaaagaataattacttaattta 42573864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 24075214 - 24075125
Alignment:
Q  108 cactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatca-gtgcattggaaattaaaaactttgacattattaaagaa 196  Q
    |||| ||||| ||||||||||| |||| |||| ||||||||| | |||| | |||||||| |||||||| ||||||||||| ||||||||    
T  24075214 cactggttaaagactttaaatgataacattttttgaaaatttatataataaagtgcattgaaaattaaacactttgacatttttaaagaa 24075125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 46804819 - 46804919
Alignment:
Q  111 tagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattt 210  Q
    ||||||| ||| |||||||||||  | |||||||| ||  ||||||||||||||||||||||| ||| |||  |||| ||||| |||  |||||||||||    
T  46804819 tagttaatgaccttaaatggtaaactattatgaaagttaatgtaatcagtgcattggaaattagaaagtttatcatttttaaaaaattattaattaattt 46804918  T
Q  211 a 211  Q
    |    
T  46804919 a 46804919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 30548387 - 30548313
Alignment:
Q  107 gcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttg 182  Q
    |||||||||||| || |||||||||||  |||||||||| || |||||||||||| |||||||||| |||| ||||    
T  30548387 gcactagttaag-accttaaatggtaaacttttatgaaagttagtgtaatcagtgtattggaaattgaaaagtttg 30548313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 40377159 - 40377088
Alignment:
Q  105 gggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaa 176  Q
    ||||||||||||||| ||||||||||||| || | ||||||| ||||||||||| || ||||| ||| ||||    
T  40377159 gggcactagttaaggcctttaaatggtaatttatcatgaaaagttgtgtaatcaatgaattgggaatcaaaa 40377088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 9931875 - 9931810
Alignment:
Q  122 tttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacatt 187  Q
    |||||||||||| ||||||| ||| |||||||||| | || |||| ||||| ||||||||||||||    
T  9931875 tttaaatggtaattttttataaaagtttgtgtaattaatgtattgaaaattgaaaactttgacatt 9931810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 24034166 - 24034081
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaata 198  Q
    |||| ||||||||||| ||||  |||||| | | ||||||||||||||||||| |||||| |||||||| | ||| | ||||||||    
T  24034166 gttatggactttaaatagtaaacttttataagagtttgtgtaatcagtgcattagaaattgaaaacttttaaattttgaaagaata 24034081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 47364049 - 47364098
Alignment:
Q  122 tttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaat 171  Q
    |||||||| ||| |||||||||||||||||||||||||| |||| |||||    
T  47364049 tttaaatgataaatttttatgaaaatttgtgtaatcagttcattagaaat 47364098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 759221 - 759296
Alignment:
Q  111 tagttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgaca 185  Q
    |||||||| ||||||||||||||  ||||||| || ||||||||||  |||| ||||||||||  |||||||||||    
T  759221 tagttaagaactttaaatggtaatcttttatgtaagtttgtgtaataaagtgtattggaaattggaaactttgaca 759296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 50222612 - 50222667
Alignment:
Q  121 ctttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaa 176  Q
    |||||||| |||| |||||||||||||  ||||||||| ||||||| |||||||||    
T  50222612 ctttaaatagtaattttttatgaaaataagtgtaatcaatgcattgaaaattaaaa 50222667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 290841 - 290931
Alignment:
Q  108 cactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaata 198  Q
    |||||| ||| ||| ||| || ||||| |||||| ||| | |||||| |||| ||||||||||||||||||||| | ||| | ||||||||    
T  290841 cactagctaaagaccttagatagtaaccttttataaaagtatgtgtagtcagcgcattggaaattaaaaacttttaaattttgaaagaata 290931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 5115612 - 5115662
Alignment:
Q  122 tttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatt 172  Q
    |||||||||||| ||||| || ||||||||||||| | |||||||||||||    
T  5115612 tttaaatggtaaatttttttgtaaatttgtgtaattaatgcattggaaatt 5115662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 30350911 - 30350978
Alignment:
Q  108 cactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaa 177  Q
    |||||||||| ||| ||||||||||||  ||||||||| || ||||||||| ||||||| ||||| ||||    
T  30350911 cactagttaaagaccttaaatggtaac--tttatgaaagttagtgtaatcaatgcattgaaaattgaaaa 30350978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 31745397 - 31745455
Alignment:
Q  106 ggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcat 164  Q
    |||||||||||||| |||||||| ||||||| | || ||||| |||||||||| |||||    
T  31745397 ggcactagttaaggcctttaaatagtaacttatcataaaaatatgtgtaatcaatgcat 31745455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 34596125 - 34596175
Alignment:
Q  121 ctttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaat 171  Q
    ||||||||| ||||||||||||||| | |||||||||| ||||||| ||||    
T  34596125 ctttaaatgataactttttatgaaattatgtgtaatcaatgcattgaaaat 34596175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 35543392 - 35543498
Alignment:
Q  105 gggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaat 204  Q
    |||||||  |||| ||| ||||||||||||||| ||  ||| |||||||||| | |  |||||||||| |||||||||| ||| | ||| |||| ||| |    
T  35543392 gggcacttattaaagaccttaaatggtaactttgtacaaaagtttgtgtaattaatatattggaaattgaaaactttgatattttaaaaaaataattact 35543491  T
Q  205 taattta 211  Q
    |||||||    
T  35543492 taattta 35543498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 44719297 - 44719239
Alignment:
Q  106 ggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcat 164  Q
    |||||||||||||  ||||||||||||| || | |||||||| |||||||||| |||||    
T  44719297 ggcactagttaagagctttaaatggtaatttatcatgaaaatgtgtgtaatcattgcat 44719239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 45753551 - 45753485
Alignment:
Q  121 ctttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacatt 187  Q
    ||||||||| |||  |||| |||||||||||||||||| ||||||| ||||| |||  |||||||||    
T  45753551 ctttaaatgataatgttttttgaaaatttgtgtaatcaatgcattgaaaattgaaatatttgacatt 45753485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 9590967 - 9590918
Alignment:
Q  122 tttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaat 171  Q
    ||||||||||||| |||||||||||| |||||||||| | ||||| ||||    
T  9590967 tttaaatggtaacattttatgaaaatgtgtgtaatcaatacattgtaaat 9590918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 26700335 - 26700290
Alignment:
Q  136 ttttatgaaaatttgtgtaatcagtgcattggaaattaaaaacttt 181  Q
    |||||| ||| |||||||||| |||| |||||||||||||||||||    
T  26700335 ttttataaaagtttgtgtaatgagtgtattggaaattaaaaacttt 26700290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 39807643 - 39807558
Alignment:
Q  103 tggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacatt 187  Q
    ||||||||||||||| |||||| ||||| | ||||||| |||| ||| ||||||  ||||||||| ||||| |||| ||| |||||    
T  39807643 tggggcactagttaaagactttcaatggcagctttttacgaaagtttatgtaataaagtgcattgaaaattgaaaattttaacatt 39807558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 42564298 - 42564262
Alignment:
Q  122 tttaaatggtaactttttatgaaaatttgtgtaatca 158  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  42564298 tttaaatggtaactttttttgaaaatttgtgttatca 42564262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 12848467 - 12848583
Alignment:
Q  111 tagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattt 210  Q
    ||||||||||| |||||||  |||||||||||||| |||||||||| |||||| |||||||| ||||||||||||||||||||||||||||| |||||||    
T  12848467 tagttaaggaccttaaatgacaactttttatgaaagtttgtgtaattagtgcaatggaaattgaaaactttgacattattaaagaatagttacttaattt 12848566  T
Q  211 aattatgcttacagagtg 228  Q
    || |||||||| ||||||    
T  12848567 aa-tatgcttaaagagtg 12848583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 30523111 - 30523013
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaa 212  Q
    ||||| || ||| ||||||||||||||||||| |||||||||| ||| ||||||||||| |||||||||||||| |||||||| | ||| |||||||||    
T  30523111 ttaagtaccttagatggtaactttttatgaaagtttgtgtaattagtacattggaaattgaaaactttgacattgttaaagaaaaattatttaatttaa 30523013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 33455067 - 33454979
Alignment:
Q  123 ttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||||| ||||||||||||||||| ||||||||||| || |||| ||||| |||||||||||||| |||||||||||||  ||||||||    
T  33455067 ttaaatagtaactttttatgaaaagttgtgtaatcaatgtattgtaaattgaaaactttgacatttttaaagaatagtttcttaattta 33454979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 24389632 - 24389718
Alignment:
Q  125 aaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||||||||||| |||||||| ||||||||||||| |||||||||||| |||||||||||||  | |||||||| ||| ||||||||    
T  24389632 aaatggtaacttcttatgaaagtttgtgtaatcagcgcattggaaattgaaaactttgacatcttaaaagaataattacttaattta 24389718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 431621 - 431726
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgt-aatcagtgcattggaaattaaaaactttgacattattaaagaatagtta 202  Q
    |||||| | ||||| ||||||||||||||||||||||||||| ||||||| ||  ||||||||||||||| |||| ||| ||||| |||||||||| |||    
T  431621 ggggcattggttaaagactttaaatggtaactttttatgaaagtttgtgtaaaaaagtgcattggaaattgaaaattttaacatttttaaagaataatta 431720  T
Q  203 attaat 208  Q
     |||||    
T  431721 cttaat 431726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 32066833 - 32066757
Alignment:
Q  111 tagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacatt 187  Q
    ||||||||||| ||||||  ||||||||||||||| |||||||||| ||| |||| |||||||||||||||||||||    
T  32066833 tagttaaggaccttaaattataactttttatgaaagtttgtgtaattagtacattagaaattaaaaactttgacatt 32066757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 113 - 208
Target Start/End: Original strand, 42342487 - 42342581
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaat 208  Q
    ||||||||  ||||||||||||||||||||||||||||| ||||||||| |||  ||||| |||| ||||||||| |||||||||| ||| |||||    
T  42342487 gttaaggatattaaatggtaactttttatgaaaatttgtttaatcagtgtatt-aaaattgaaaattttgacatttttaaagaataattatttaat 42342581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 33068540 - 33068638
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||||||||  ||||  |||||||||||||||| ||||| ||||||||||||| |||||| |||||||| ||||| ||||| |||| ||| ||||||||    
T  33068540 gttaaggaccataaaaagtaactttttatgaaagtttgtataatcagtgcattagaaattgaaaactttcacatttttaaaaaataattacttaattta 33068638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 33634796 - 33634894
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaa 212  Q
    ||||||||||||||| |||||||||||| |||| ||||| ||||||| ||||||||||| |||||||| | ||| | || ||||| ||| |||||||||    
T  33634796 ttaaggactttaaatagtaactttttataaaaagttgtgcaatcagtacattggaaattgaaaactttcatattttaaacgaataattatttaatttaa 33634894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 565706 - 565774
Alignment:
Q  130 gtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaata 198  Q
    |||||||||||||||| |||||||||| ||||||| ||||||| |||||||| ||||| ||||||||||    
T  565706 gtaactttttatgaaagtttgtgtaattagtgcataggaaattgaaaactttcacatttttaaagaata 565774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 12205620 - 12205529
Alignment:
Q  122 tttaaatggtaactttttatgaaaatttgtgtaatca-gtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaa 212  Q
    |||||||||||||||||| |||||||||||||||| | |||||||| ||||  |||||||||| |||  |||| |||| ||| |||||||||    
T  12205620 tttaaatggtaactttttttgaaaatttgtgtaataatgtgcattgcaaatggaaaactttgatatttataaaaaataattacttaatttaa 12205529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 113 - 228
Target Start/End: Complemental strand, 3074187 - 3074075
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatt-aaaaactttgacattattaaagaatagttaattaattta 211  Q
    ||||| |||||||||||||||||||| || ||| ||   ||||||||||||||||||||| ||||||||||| ||| | || ||||| ||| |||||||     
T  3074187 gttaaagactttaaatggtaacttttcattaaagtt---gtaatcagtgcattggaaattgaaaaactttgatattttaaatgaataattacttaattt- 3074092  T
Q  212 attatgcttacagagtg 228  Q
    || ||||||| ||||||    
T  3074091 atcatgcttaaagagtg 3074075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 6411367 - 6411469
Alignment:
Q  109 actagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaat 208  Q
    |||||||||| || ||||||  ||||||||||| ||| | |||||||||||| ||||||||||| |||||||| | ||| | |||||||| ||| || ||    
T  6411367 actagttaagaaccttaaataataactttttataaaagtatgtgtaatcagtacattggaaattgaaaacttttaaattttaaaagaataattactttat 6411466  T
Q  209 tta 211  Q
    |||    
T  6411467 tta 6411469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 8964477 - 8964403
Alignment:
Q  137 tttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||||||||||||||||||||| ||||||||||||| |||  ||| || || |||||||||| ||| ||||||||    
T  8964477 tttatgaaaatttgtgtaatcaatgcattggaaattgaaatattttacttttttaaagaataattacttaattta 8964403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 9049148 - 9049246
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaa 212  Q
    ||||| || ||||||  ||||||||||| |||||||||||||| | ||||||| ||||| |||| ||| ||||| | |||||||| ||| |||||||||    
T  9049148 ttaagaaccttaaataataactttttataaaaatttgtgtaattaatgcattgaaaattgaaaaatttaacattttaaaagaataattacttaatttaa 9049246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 211
Target Start/End: Original strand, 6334678 - 6334767
Alignment:
Q  122 tttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||||||| ||||||||||  ||| ||| | |||||| ||||||||||||| |||||||||||||| ||||| |||| ||  ||||||||    
T  6334678 tttaaatgataactttttacaaaagtttatataatcaatgcattggaaattgaaaactttgacatttttaaaaaataattttttaattta 6334767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 188
Target Start/End: Original strand, 28695605 - 28695685
Alignment:
Q  109 actagttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacatta 188  Q
    |||||||||  ||||||||| |||||||||||| ||| ||||||||||  | ||||||||||||| || ||||||||||||    
T  28695605 actagttaaacactttaaatagtaactttttataaaagtttgtgtaataaattgcattggaaattgaacactttgacatta 28695685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 7271880 - 7271826
Alignment:
Q  122 tttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaa 176  Q
    |||||||| ||||||||||||||||| | |||||||| |||||||||||| ||||    
T  7271880 tttaaatgataactttttatgaaaatatatgtaatcaatgcattggaaataaaaa 7271826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 33898643 - 33898685
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaat 156  Q
    |||||||| ||||||||||||||||||| ||||||||||||||    
T  33898643 ttaaggaccttaaatggtaactttttataaaaatttgtgtaat 33898685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 5961954 - 5962019
Alignment:
Q  107 gcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatt 172  Q
    |||||| |||||  |||||||| |||||| ||| ||||||||| |||||||| |||||||||||||    
T  5961954 gcactatttaagacctttaaatagtaactgtttttgaaaatttatgtaatcaatgcattggaaatt 5962019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 12762896 - 12762965
Alignment:
Q  141 tgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattt 210  Q
    ||||| ||||||||| |||||||||||||||| |||| ||| ||||| || ||||||| ||| |||||||    
T  12762896 tgaaagtttgtgtaaacagtgcattggaaattgaaaattttaacattttttaagaataattacttaattt 12762965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 18043942 - 18043881
Alignment:
Q  120 actttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaacttt 181  Q
    ||||||||| |||||||||||| ||| |||||||||| | ||||||| ||| ||||||||||    
T  18043942 actttaaatagtaactttttataaaactttgtgtaattaatgcattgaaaactaaaaacttt 18043881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 40874934 - 40874825
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatt-aaaaactttgacattattaaagaatagtta 202  Q
    |||||||| |||||||||||||||| ||||  |||||||||| || |||  || ||||| ||| ||||| ||||| ||| ||||| ||||| |||| |||    
T  40874934 ggggcactggttaaggactttaaatagtaaacttttatgaaagttagtgccattagtgcgttgaaaattgaaaaagtttaacatttttaaaaaataatta 40874835  T
Q  203 attaatttaa 212  Q
     |||||||||    
T  40874834 cttaatttaa 40874825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 212
Target Start/End: Original strand, 3666431 - 3666534
Alignment:
Q  109 actagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaat 208  Q
    ||||||||| ||  ||||||  ||| ||||||||||| ||| |||||||| || ||||  ||||||||| ||| | ||| |||||||||| ||| |||||    
T  3666431 actagttaaagatcttaaataataattttttatgaaagtttatgtaatcaatgtattgagaattaaaaattttaatatttttaaagaataattacttaat 3666530  T
Q  209 ttaa 212  Q
    ||||    
T  3666531 ttaa 3666534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 228
Target Start/End: Original strand, 6083911 - 6084013
Alignment:
Q  125 aaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaattatgcttacag 224  Q
    ||||| ||||||||||| ||| |||||||||||||  ||||| ||||| |||||||||| ||| | ||| |||| ||| | ||||| | |||||||| ||    
T  6083911 aaatgataactttttataaaagtttgtgtaatcagcacattgaaaattgaaaactttgatattttaaaataataattactaaattt-agtatgcttaaag 6084009  T
Q  225 agtg 228  Q
    ||||    
T  6084010 agtg 6084013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 15806054 - 15806105
Alignment:
Q  130 gtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaacttt 181  Q
    |||||||||||| ||| |||||||||||| ||||||| ||||| ||||||||    
T  15806054 gtaactttttataaaagtttgtgtaatcaatgcattgaaaattgaaaacttt 15806105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 30869589 - 30869644
Alignment:
Q  143 aaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaata 198  Q
    ||||||||||| ||||||| ||| |||||| |||||||| ||||| ||||||||||    
T  30869589 aaaatttgtgttatcagtgtattagaaattgaaaactttaacatttttaaagaata 30869644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 207
Target Start/End: Original strand, 8333580 - 8333665
Alignment:
Q  122 tttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaa 207  Q
    |||| ||||||| ||||||| |||||||||||| ||  |||||||  |||| |||  |||||| ||||||||||||| ||| ||||    
T  8333580 tttagatggtaagtttttataaaaatttgtgtattcgatgcattgagaattgaaatgtttgactttattaaagaataattacttaa 8333665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 10183299 - 10183218
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaag 194  Q
    ||||||||  |||||| |||| | ||||||||||||||| |||| | ||||||  ||||| |||| ||||||||| ||||||    
T  10183299 gttaaggatcttaaatagtaaatatttatgaaaatttgtataattaatgcattaaaaattgaaaattttgacatttttaaag 10183218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 11364739 - 11364702
Alignment:
Q  121 ctttaaatggtaactttttatgaaaatttgtgtaatca 158  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  11364739 ctttaaatggtaactttttataaaaatttgtataatca 11364702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 13538495 - 13538446
Alignment:
Q  123 ttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatt 172  Q
    |||||| ||||||||||||||||| || |||| ||| |||||||||||||    
T  13538495 ttaaatagtaactttttatgaaaagttatgtattcaatgcattggaaatt 13538446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 29685694 - 29685799
Alignment:
Q  106 ggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaatt 205  Q
    |||||||||||||||  | ||||  ||||||||||  ||||||||||||||| |||| ||| ||||| | |||||| | ||| | |||||||| ||| ||    
T  29685694 ggcactagttaaggatctaaaataataactttttacaaaaatttgtgtaatcggtgcgttgaaaattgagaacttttaaattttgaaagaataattactt 29685793  T
Q  206 aattta 211  Q
     |||||    
T  29685794 tattta 29685799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 32787586 - 32787623
Alignment:
Q  121 ctttaaatggtaactttttatgaaaatttgtgtaatca 158  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  32787586 ctttaaatgataactttatatgaaaatttgtgtaatca 32787623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 6761731 - 6761807
Alignment:
Q  121 ctttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaat 197  Q
    |||||||  ||| |||||| ||||||||| |||||||| ||||||||||||| |||  |||||| || ||| |||||    
T  6761731 ctttaaaatgtatctttttttgaaaatttatgtaatcaatgcattggaaattgaaatatttgacttttttatagaat 6761807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 21004811 - 21004775
Alignment:
Q  122 tttaaatggtaactttttatgaaaatttgtgtaatca 158  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  21004811 tttaaatggtaattttttttgaaaatttgtgtaatca 21004775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 21277666 - 21277563
Alignment:
Q  108 cactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaa 207  Q
    |||| ||||||||  |||||||||||  |||||| ||| ||  ||||||||||||||| | |||| |||| ||||||||| | ||| |||| ||| ||||    
T  21277666 cactggttaaggatcttaaatggtaaacttttataaaagttactgtaatcagtgcatt-gcaattgaaaagtttgacattttaaaaaaataattacttaa 21277568  T
Q  208 tttaa 212  Q
    |||||    
T  21277567 tttaa 21277563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 30822764 - 30822816
Alignment:
Q  160 tgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaa 212  Q
    ||||||||||||| |||||||||||||| | ||| |||| ||| |||||||||    
T  30822764 tgcattggaaattgaaaactttgacattttcaaaaaataattacttaatttaa 30822816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 44941072 - 44941136
Alignment:
Q  107 gcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaat 171  Q
    ||||||||||||| ||||||||||||| || | | |||||| | |||||||| ||||| ||||||    
T  44941072 gcactagttaaggcctttaaatggtaatttatcaggaaaatatatgtaatcaatgcatcggaaat 44941136  T

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Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 8238068 - 8237961
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaa 203  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||||| |||||||||| |||     
T  8238068 ggggcattagttaaggaccttaaatggtaactttttatgaaagtttgtgtaatcagtgcattgaaaaatgaaaactttgacatttttaaagaataattac 8237969  T
Q  204 ttaattta 211  Q
    ||||||||    
T  8237968 ttaattta 8237961  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 19620101 - 19620003
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    ||||||| | |||||| ||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| |||||||||| ||  ||||||||    
T  19620101 gttaagggccttaaatagtaactttttatgaaaagttgtataatcagtgcattggaaattgaaaactttgacatttttaaagaataatttcttaattta 19620003  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 34299731 - 34299825
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaata 198  Q
    |||||| | ||||||||| |||||| |||||||||||||||| |||||||||||||||| ||| ||||| |||||||||||||| ||||||||||    
T  34299731 ggggcattggttaaggaccttaaatagtaactttttatgaaagtttgtgtaatcagtgctttgtaaattgaaaactttgacatttttaaagaata 34299825  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 5482395 - 5482502
Alignment:
Q  103 tggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagtta 202  Q
    ||||||||  |||||||||||||||| |||||||||||||||| ||||||||| || ||||||||||| | |||||||||||||| | |||||||| |||    
T  5482395 tggggcacgggttaaggactttaaattgtaactttttatgaaattttgtgtaaccaatgcattggaaa-tgaaaactttgacattttaaaagaataatta 5482493  T
Q  203 attaattta 211  Q
     ||||||||    
T  5482494 cttaattta 5482502  T

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Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 251
Target Start/End: Complemental strand, 5907941 - 5907795
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaa 203  Q
    ||||||||||||||||||||||||| ||||  ||||||||||||| ||||||| |||||||||||||| ||||| ||||||||| | ||| |||| |||     
T  5907941 ggggcactagttaaggactttaaatagtaaacttttatgaaaattagtgtaattagtgcattggaaataaaaaagtttgacatt-taaaaaaataattac 5907843  T
Q  204 ttaatttaattatgcttacagagtggtc-aggacactcgttaacaagac 251  Q
    ||||||| |  ||||||| ||||||  | ||| ||||||||||||||||    
T  5907842 ttaattt-agaatgcttaaagagtgccctagggcactcgttaacaagac 5907795  T

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Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 24299146 - 24299227
Alignment:
Q  131 taactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaa 212  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||| |||| ||||| ||  |||||||||    
T  24299146 taactttttatgaaaagttgtataatcagtgcattggaaattaaaaaatttgacatttttaaggaataatttcttaatttaa 24299227  T

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Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 43492189 - 43492297
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacattattaaagaatagtta 202  Q
    ||||||||  ||||||  |||||||||||||||||||| ||| ||||||||||  |||||||||||||||  ||| |||||||||  ||||||||| |||    
T  43492189 ggggcactgattaagggatttaaatggtaactttttattaaagtttgtgtaataaagtgcattggaaattgtaaattttgacatttctaaagaataatta 43492288  T
Q  203 attaattta 211  Q
     ||||||||    
T  43492289 cttaattta 43492297  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 24610826 - 24610933
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaa 203  Q
    |||||||  ||||||||||||||||| ||| ||||||| ||| |||||||||| |||| ||| |||||| |||||||| ||||| | |||||||| ||      
T  24610826 ggggcacgggttaaggactttaaatgataattttttataaaagtttgtgtaattagtgaattagaaattcaaaactttaacattttaaaagaataattgt 24610925  T
Q  204 ttaattta 211  Q
    ||||||||    
T  24610926 ttaattta 24610933  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 38988816 - 38988716
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaa-atttgtgtaatca-gtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    ||||| |||||||||| ||||||||||| ||| |||| |||||| | ||||||||||||||||| ||||| ||||||||||| |||  ||| ||||||||    
T  38988816 ttaagcactttaaatgataactttttataaaatatttatgtaataaagtgcattggaaattaaacactttaacattattaaaaaattattacttaattta 38988717  T
Q  212 a 212  Q
    |    
T  38988716 a 38988716  T

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Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 120 - 228
Target Start/End: Original strand, 39316297 - 39316404
Alignment:
Q  120 actttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaattatgct 219  Q
    |||||||||  |||||||||||||||  |||||||| |||| || |  ||||| |||| |||||||||||| ||||||| ||| ||||||||| ||||||    
T  39316297 actttaaattataactttttatgaaagcttgtgtaaccagtacagtaaaaattgaaaattttgacattattgaagaataattacttaatttaa-tatgct 39316395  T
Q  220 tacagagtg 228  Q
    || ||||||    
T  39316396 taaagagtg 39316404  T

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Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 198
Target Start/End: Complemental strand, 7432743 - 7432660
Alignment:
Q  116 aaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacattattaaagaata 198  Q
    |||||||||||||||||||||||||| ||| |||||| |||  ||||||||| |||||||||||||| | ||| ||||| ||||    
T  7432743 aaggactttaaatggtaactttttataaaagtttgtgcaataaagtgcattgaaaattaaaaactttaatatttttaaataata 7432660  T

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Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 44452038 - 44452137
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    ||||| |||||||||| |||| ||||||||||| ||||||||||  ||||||||||||||| |||  ||||| ||| ||||| |||| ||| ||||||||    
T  44452038 gttaatgactttaaatagtaattttttatgaaagtttgtgtaataaagtgcattggaaattgaaacttttgatatttttaaataataattacttaattta 44452137  T

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Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 23682444 - 23682546
Alignment:
Q  108 cactagttaaggacttt-aaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaatta 206  Q
    ||||| ||||||||||| ||| ||||||||||||| ||| ||||| | |||| || |||| |||||||||||||||||||| ||||| |||| ||| |||    
T  23682444 cactaattaaggacttttaaagggtaactttttataaaagtttgtcttatcattg-attgaaaattaaaaactttgacatt-ttaaaaaataattattta 23682541  T
Q  207 attta 211  Q
    |||||    
T  23682542 attta 23682546  T

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Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 41150034 - 41150110
Alignment:
Q  135 tttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    ||||||||||||||||| ||||||||||||||  |||| ||| |||| ||| | |||||||||| ||| ||||||||    
T  41150034 tttttatgaaaatttgtataatcagtgcattgtgaattgaaatctttaacacttttaaagaataattacttaattta 41150110  T

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Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 47305514 - 47305567
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatc 157  Q
    ||||||||||||||||  ||||||||||||||| | |||||||| |||||||||    
T  47305514 ggggcactagttaaggtgtttaaatggtaacttatcatgaaaatatgtgtaatc 47305567  T

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Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 18926425 - 18926377
Alignment:
Q  124 taaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatt 172  Q
    ||||||||||||||||||||||| ||||||| ||| ||||||| |||||    
T  18926425 taaatggtaactttttatgaaaagttgtgtattcaatgcattgaaaatt 18926377  T

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Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 26871890 - 26871782
Alignment:
Q  103 tggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagtta 202  Q
    ||||| ||| ||||||||| |||||| |||| ||||||| ||| ||||||||||||||  | || ||||| |||||||| | ||| | |||||||| |||    
T  26871890 tggggtactggttaaggaccttaaatagtaattttttataaaagtttgtgtaatcagtataatgaaaattcaaaacttttaaattttaaaagaataatta 26871791  T
Q  203 attaattta 211  Q
     || |||||    
T  26871790 ctttattta 26871782  T

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Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 32699447 - 32699395
Alignment:
Q  131 taactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttga 183  Q
    ||||||||||||||| |||||| |||||||||||| |||||| |||| |||||    
T  32699447 taactttttatgaaagtttgtgcaatcagtgcatttgaaattgaaaattttga 32699395  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 39241687 - 39241581
Alignment:
Q  106 ggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatt-aaaaactttgacattattaaagaatagttaat 204  Q
    |||||| ||||||||| | |||||||||  ||||||||||  | || |||||||| ||||||||||| ||||  | ||||||| |||||||||| ||  |    
T  39241687 ggcactggttaaggacctaaaatggtaaacttttatgaaagctagtataatcagtccattggaaattgaaaaggtatgacatttttaaagaataattgct 39241588  T
Q  205 taattta 211  Q
    |||||||    
T  39241587 taattta 39241581  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 9097683 - 9097751
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatt 172  Q
    |||||||||||||| ||||  || |||||| | ||||||||||| |||||| | | |||||||||||||    
T  9097683 ggggcactagttaaagactacaagtggtaagtatttatgaaaatgtgtgtattaattgcattggaaatt 9097751  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 31902747 - 31902831
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaata 198  Q
    ||||||||||||||| |||| |||||||| ||| ||||||| ||| || |||| ||||| |||  |||||| || |||| |||||    
T  31902747 ttaaggactttaaatagtaaatttttatggaaaattgtgtagtcaatgtattgaaaattgaaatatttgactttcttaaggaata 31902831  T

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Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 40722459 - 40722383
Alignment:
Q  122 tttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaata 198  Q
    ||||||| |||| ||||||||  |||||||||||| | ||||||| ||||| |||  |||||| || ||||||||||    
T  40722459 tttaaatagtaagtttttatggtaatttgtgtaattaatgcattgaaaattgaaatatttgactttcttaaagaata 40722383  T

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Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 47507713 - 47507649
Alignment:
Q  119 gactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttga 183  Q
    |||||||||||||||||| | |||||||  |||||||||| | ||| ||||||| ||| ||||||    
T  47507713 gactttaaatggtaacttctcatgaaaaaatgtgtaatcaatacatcggaaattgaaatctttga 47507649  T

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Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 12002385 - 12002278
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaa 203  Q
    |||||||| ||||||||  |||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| |||     
T  12002385 ggggcactggttaaggatcttaaatagtaactttttataaaaatttgtgtaatcagtgcattggaaattgaaaacttttacatttttaaagaataattac 12002286  T
Q  204 ttaattta 211  Q
    ||||||||    
T  12002285 ttaattta 12002278  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 1876479 - 1876577
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| ||||||||| | |||||||| ||| ||||||||    
T  1876479 gttaaggactttaaatggtaattttttatgaaagtttgtgtaatcagtgcattggaaattgaaaattttgacattttaaaagaataattacttaattta 1876577  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 11533345 - 11533242
Alignment:
Q  109 actagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaat 208  Q
    ||||||||||| | ||||||||||| ||||||||||| ||||||   ||||||||||||||||| |||||||||||||| |||||||||| || ||||||    
T  11533345 actagttaagggccttaaatggtaattttttatgaaagtttgtgccttcagtgcattggaaattgaaaactttgacatttttaaagaataatttattaat 11533246  T
Q  209 ttaa 212  Q
    ||||    
T  11533245 ttaa 11533242  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 36907918 - 36907841
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaacttt 181  Q
    |||||||||| |||||||||||||| |||||||||||| ||| |||||||||||| ||||||||||||| ||||||||    
T  36907918 ggggcactagctaaggactttaaatagtaactttttataaaagtttgtgtaatcattgcattggaaattgaaaacttt 36907841  T

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Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 31844214 - 31844313
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||||||||||||||| |||||||||||||||| ||||| ||||  ||||||||||||||| ||||||||||| || |||| ||||| ||| ||||||||    
T  31844214 gttaaggactttaaatagtaactttttatgaaagtttgtataatgaagtgcattggaaattcaaaactttgacttttttaaggaataattacttaattta 31844313  T

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Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 40628964 - 40629063
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaa 212  Q
    ||||||||| |||||| ||||  |||||| ||| ||||||||||||||| ||||||||||||||||||| ||||| |||| ||||| ||| |||||||||    
T  40628964 gttaaggaccttaaatagtaatcttttataaaagtttgtgtaatcagtgaattggaaattaaaaactttaacatttttaatgaataattacttaatttaa 40629063  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 44220716 - 44220806
Alignment:
Q  122 tttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaa 212  Q
    |||||||||||| |||||||| |  |||||||||| ||||||||||||||| |||||||||||||| | |||||||| ||| |||||||||    
T  44220716 tttaaatggtaaatttttatggacgtttgtgtaatgagtgcattggaaattgaaaactttgacattttaaaagaataattacttaatttaa 44220806  T

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Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 14016855 - 14016932
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaacttt 181  Q
    |||||||||||||||||| |||||| |||| ||||||| ||| ||||||| |||||||||||||||||| ||||||||    
T  14016855 ggggcactagttaaggaccttaaatagtaattttttataaaagtttgtgtgatcagtgcattggaaattgaaaacttt 14016932  T

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Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 30486728 - 30486619
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaacttttt-atgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagtta 202  Q
    |||| ||| |||||||||||||||| |||| ||||| || ||| |||||||||||||||||||  |||||||||||||| | ||| | |||||||| |||    
T  30486728 ggggtactggttaaggactttaaatagtaatttttttataaaagtttgtgtaatcagtgcattataaattaaaaacttttaaattttaaaagaataatta 30486629  T
Q  203 attaatttaa 212  Q
     || ||||||    
T  30486628 ctttatttaa 30486619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 1445137 - 1445213
Alignment:
Q  120 actttaaatggtaactttttatgaaaatttgtgtaatca-gtgcattggaaattaaaaactttgacattattaaaga 195  Q
    |||||||||||||||||||| | ||| |||||||||| | |||||||| ||||| || |||||||||||||||||||    
T  1445137 actttaaatggtaactttttctaaaagtttgtgtaataaagtgcattgaaaattgaacactttgacattattaaaga 1445213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 18842275 - 18842351
Alignment:
Q  136 ttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaa 212  Q
    |||||| ||| |||||||||||| | ||||  |||||||||||||||||||| |||||||||| ||| |||||||||    
T  18842275 ttttataaaagtttgtgtaatcaatacattaaaaattaaaaactttgacatttttaaagaataattacttaatttaa 18842351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 7627844 - 7627943
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaa 212  Q
    ||||| |||| ||||  |||| ||||||||||| ||||||| ||||||| ||| ||||||||||||||| ||||| || || |||| ||| |||||||||    
T  7627844 gttaatgactataaaaagtaattttttatgaaagtttgtgtgatcagtgtattagaaattaaaaactttcacattttttaaaaataattacttaatttaa 7627943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 39594477 - 39594584
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaa 203  Q
    |||||| | ||||||||  ||||||| ||||||||||||||| ||||| ||||||||| | || ||||| |||||||||| |||  ||||||||| ||      
T  39594477 ggggcattggttaaggatcttaaatgataactttttatgaaagtttgtataatcagtgtaatgaaaattgaaaactttgatatttataaagaataatttc 39594576  T
Q  204 ttaattta 211  Q
    ||||||||    
T  39594577 ttaattta 39594584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 41959969 - 41960064
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacattattaaagaata 198  Q
    |||| ||| ||||||||||||||||| ||| ||||||||||| ||||| ||||  ||||||||||||  | |||||||| ||||| ||||||||||    
T  41959969 ggggtactggttaaggactttaaatgataattttttatgaaagtttgtataataaagtgcattggaagcttaaaactttaacatttttaaagaata 41960064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 2376726 - 2376824
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaa 212  Q
    |||||||| |||||| |||||||||||||||| ||| | |||| | | | || |||||| |||||||||| ||| |||||||||| ||| |||||||||    
T  2376726 ttaaggaccttaaatagtaactttttatgaaagtttatataattaatacgttagaaattgaaaactttgatatttttaaagaataattatttaatttaa 2376824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 14453794 - 14453716
Alignment:
Q  107 gcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatca-gtgcattggaaattaaaaactttgacatt 187  Q
    ||||||||||| ||||||||||| |||  |||| |||||||||||||||| | |||||||| ||||||||||||||||||||    
T  14453794 gcactagttaaagactttaaatg-taa--ttttgtgaaaatttgtgtaataaagtgcattgaaaattaaaaactttgacatt 14453716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 32271278 - 32271180
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaa 212  Q
    |||| ||| |||||||||| ||||||||| || |||||||||||| || ||| |||||| |||||||| ||||| ||||| |||| ||  |||||||||    
T  32271278 ttaaagacattaaatggtatctttttatggaagtttgtgtaatcaatgaattagaaattgaaaactttaacatttttaaaaaataatttcttaatttaa 32271180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 38047607 - 38047705
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||  ||||||||  |||||||||  |||||||||  ||||||| | ||| ||||||||    
T  38047607 ttaaggactttaaatgataactttatatgaaagtttgtgtaataaagtgcattaaaaattaaaatttttgacatttataaagaaaaattacttaattta 38047705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 35501064 - 35501133
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaacttt 181  Q
    ||||||||||||||||  ||| ||||||| ||| ||||||||||  ||||||||||||||||||||||||    
T  35501064 gttaaggactttaaatattaaatttttataaaagtttgtgtaataaagtgcattggaaattaaaaacttt 35501133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 34722774 - 34722834
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaatt 172  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||  ||||||||| |||||    
T  34722774 gttaaggactttaaatggtaactttttatgaaagtttgtataataaagtgcattgaaaatt 34722834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 44907318 - 44907229
Alignment:
Q  123 ttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatt-aaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||||| |||| ||||||||||| || |||| || ||||||||| ||||| ||||| ||||||||| ||||| |||| ||| ||||||||    
T  44907318 ttaaatagtaaatttttatgaaagttagtgttattagtgcattgaaaattgaaaaagtttgacatttttaaaaaataattacttaattta 44907229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 7931812 - 7931764
Alignment:
Q  125 aaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatta 173  Q
    ||||||||||||||| |||||||||||||||||| | ||||| ||||||    
T  7931812 aaatggtaactttttttgaaaatttgtgtaatcaatacattgaaaatta 7931764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 38019418 - 38019513
Alignment:
Q  115 taaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    ||||||| |||||||||||| |||||||||| | ||||||||| ||||||| || ||| |||||||| | | | |||||||||| ||  ||||||||    
T  38019418 taaggacattaaatggtaacattttatgaaagtatgtgtaatc-gtgcattagagattgaaaactttaaaaattttaaagaataatttcttaattta 38019513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 39691112 - 39691196
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaata 198  Q
    |||||||  |||||| |||| |||||||||||||||||||| ||| ||||||| ||||| ||   |||||| || ||||||||||    
T  39691112 ttaaggatcttaaatagtaattttttatgaaaatttgtgtattcaatgcattgaaaattgaactatttgacttttttaaagaata 39691196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 26014752 - 26014807
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaa 169  Q
    ||||||||  ||||| |||||||||||| ||  |||||||||||||||||||||||    
T  26014752 ttaaggaccataaatagtaactttttataaatgtttgtgtaatcagtgcattggaa 26014807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 35592539 - 35592489
Alignment:
Q  122 tttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatt 172  Q
    ||||||||||||||||||||| |||||||| | |||| ||| |||||||||    
T  35592539 tttaaatggtaactttttatggaaatttgtctgatcattgccttggaaatt 35592489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 30158108 - 30158157
Alignment:
Q  162 cattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||||||||||||||||||| ||||| | |||||||| ||| ||||||||    
T  30158108 cattggaaattaaaaacttttacattttcaaagaataattatttaattta 30158157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 32133686 - 32133735
Alignment:
Q  107 gcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaat 156  Q
    ||||| |||||||| ||||||| |||| ||||||||||| ||||||||||    
T  32133686 gcactggttaaggaatttaaatagtaattttttatgaaagtttgtgtaat 32133735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 44960580 - 44960519
Alignment:
Q  105 gggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattg 166  Q
    |||||||  ||||| ||||| ||| |||| ||||||||||||||| |||||||| |||||||    
T  44960580 gggcactctttaagcacttttaatagtaaatttttatgaaaatttatgtaatcaatgcattg 44960519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 1773799 - 1773874
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatt--aaaaactttgacatt 187  Q
    ||||||||||||||| ||||  |||||||||| |  ||| ||| |||||||||||||||  ||||| |||||||||    
T  1773799 ttaaggactttaaatagtaaacttttatgaaagtaagtgcaattagtgcattggaaattgaaaaaagtttgacatt 1773874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 5020051 - 5020120
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgac 184  Q
    ||||||| |||||||||||||||| | |||||||  |||||||||| || || ||||||| ||| |||||||    
T  5020051 gttaaggcctttaaatggtaacttgtcatgaaaa--tgtgtaatcaatgtatcggaaattgaaatctttgac 5020120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 8349813 - 8349714
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatca-gtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||||| | ||||||||||| | |||| ||||| ||| |||||| | ||| |||  ||||| |||||||||||||| |||||| ||||||| ||||||||    
T  8349813 gttaagaattttaaatggtatcattttttgaaagtttatgtaataaagtgtattaaaaatttaaaactttgacatttttaaag-atagttatttaattta 8349715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 20523031 - 20522959
Alignment:
Q  135 tttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaa 207  Q
    ||||||||||| ||| |||||| ||||||||| ||||| |||||||| | ||| | |||||||| ||| ||||    
T  20523031 tttttatgaaagtttatgtaattagtgcattgaaaattgaaaacttttaaattttgaaagaataattacttaa 20522959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 33285923 - 33285963
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgta 154  Q
    ||||||||||||||| |||| |||||||||||| |||||||    
T  33285923 ttaaggactttaaatagtaaatttttatgaaaaattgtgta 33285963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 33619252 - 33619328
Alignment:
Q  16 atatttatatagtagaagaggtagtttattaaccaccatttcctaactccataaaactactaactaactatatataa 92  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||    
T  33619252 atatttatatagtagaagaggtagtttcttaaccaccatttcctaactccataaaactactaactacccatatataa 33619328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 29716752 - 29716836
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacatt 187  Q
    |||||||| |||||||||||||||||||||| |||||||||| ||||||||||  ||||||||||||||| ||||||||||||||    
T  29716752 ggggcactggttaaggactttaaatggtaaccttttatgaaagtttgtgtaataaagtgcattggaaattgaaaactttgacatt 29716836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 10364854 - 10364754
Alignment:
Q  111 tagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattt 210  Q
    ||||||||||| |||||| |||| ||||||||||| || || |||||||||||||| ||||| |||||||||| ||| |||||||||| ||| |||||||    
T  10364854 tagttaaggaccttaaatagtaaatttttatgaaagttcgtataatcagtgcattgtaaattgaaaactttgatatttttaaagaataattacttaattt 10364755  T
Q  211 a 211  Q
    |    
T  10364754 a 10364754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 23344690 - 23344597
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacattattaaagaa 196  Q
    |||||||| |||| | |||||||||||||||||||||| ||| ||||||||||  ||||||||||||||| || |||||||||||  |||||||    
T  23344690 ggggcactggttatgcactttaaatggtaactttttataaaagtttgtgtaataaagtgcattggaaattgaacactttgacatttgtaaagaa 23344597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 13445745 - 13445826
Alignment:
Q  130 gtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||| ||||||||||| ||||||| || ||||| || |||||| |||||||| ||||| |||||||||| ||| ||||||||    
T  13445745 gtaattttttatgaaagtttgtgtgattagtgcttttgaaattgaaaactttcacatttttaaagaatacttacttaattta 13445826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 34552311 - 34552405
Alignment:
Q  105 gggcactagttaaggactttaaatggtaacttttt-atgaaaatttgtgtaatca-gtgcattggaaattaaaaactttgacattattaaagaata 198  Q
    ||||||| |||||||||||||||||  |||||||| |||||| || ||||||| | |||||||||||||| |||||||| | ||| ||||||||||    
T  34552311 gggcactcgttaaggactttaaatgacaacttttttatgaaagtt-gtgtaataaagtgcattggaaattgaaaactttaatatttttaaagaata 34552405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 21130816 - 21130742
Alignment:
Q  103 tggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaa 177  Q
    ||||||||||||||||||| |||||| ||||  |||||||||| || ||| ||| |||| |||| ||||||||||    
T  21130816 tggggcactagttaaggaccttaaatagtaaacttttatgaaagttggtgcaattagtgtattgaaaattaaaaa 21130742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 31702747 - 31702800
Alignment:
Q  123 ttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaa 176  Q
    |||||| |||||||||||| ||||| |||||||||| |||||| ||||||||||    
T  31702747 ttaaatagtaactttttataaaaatatgtgtaatcaatgcattagaaattaaaa 31702800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 34552494 - 34552585
Alignment:
Q  107 gcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacattattaaagaata 198  Q
    ||||| |||||| ||||||||||| ||||||||||| ||| ||||||| |  ||| ||||| |||||||||||||| | ||| ||||||||||    
T  34552494 gcacttgttaagaactttaaatggcaactttttatg-aaagttgtgtattaaagtacattgaaaattaaaaactttaatatttttaaagaata 34552585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 1479081 - 1479148
Alignment:
Q  105 gggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatt 172  Q
    |||||||  ||||| |||||||||||||| |||||||| ||| ||||||| ||| ||||||| |||||    
T  1479081 gggcactctttaagcactttaaatggtaaatttttatgtaaaattgtgtattcaatgcattgaaaatt 1479148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 26187452 - 26187494
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaat 156  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||    
T  26187452 ttaaggactttaaatgttaattttttatgaaagtttgtgtaat 26187494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 354576 - 354644
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaacttt 181  Q
    ||||||| | |||||| |||||||||||| ||| | | ||||||||||||||| ||| ||| |||||||    
T  354576 gttaagggccttaaatagtaactttttataaaagtctttgtaatcagtgcattagaagttagaaacttt 354644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 53261675 - 53261569
Alignment:
Q  105 gggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaat 204  Q
    ||||||| |||||||||||||||| |||||||||||| ||| |||||||||||| ||||||||||||| |||||||| | ||| |||||||||| ||| |    
T  53261675 gggcactcgttaaggactttaaatagtaactttttataaaagtttgtgtaatcactgcattggaaattgaaaacttttaaatttttaaagaataattact 53261576  T
Q  205 taattta 211  Q
    |||||||    
T  53261575 taattta 53261569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 104 - 213
Target Start/End: Complemental strand, 40252773 - 40252665
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaa 203  Q
    |||||||| |||||||||||||||| |||| |||||||| ||| ||||||||||| || |||| ||||| |||||||| ||||| ||||| || | |||     
T  40252773 ggggcactggttaaggactttaaatagtaaatttttatg-aaagttgtgtaatcaatgtattgaaaattgaaaactttaacatttttaaataacaattac 40252675  T
Q  204 ttaatttaat 213  Q
    ||||||||||    
T  40252674 ttaatttaat 40252665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 45743414 - 45743325
Alignment:
Q  123 ttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaa 212  Q
    |||||| |||||| |||||||||| ||||||||||| || |||| ||||| |||||||||||||| |||||||||| ||  |||||||||    
T  45743414 ttaaatagtaactctttatgaaaagttgtgtaatcactgtattgaaaattgaaaactttgacatttttaaagaataatttcttaatttaa 45743325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 36876064 - 36876152
Alignment:
Q  123 ttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||| |||||||||||||| ||| |||||||||||| || |||||||||| ||||| || ||||| | |||||||||||| ||||||||    
T  36876064 ttaagtggtaactttttataaaagtttgtgtaatcaatgtattggaaattgaaaacatttacattttaaaagaatagttacttaattta 36876152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 25042743 - 25042823
Alignment:
Q  125 aaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaatt 205  Q
    ||||| ||||||||||| ||| |||||||||||||| |||| |||||| |||| ||| ||||| |||||||||| ||||||    
T  25042743 aaatgttaactttttataaaagtttgtgtaatcagtacattagaaattgaaaattttaacatttttaaagaatacttaatt 25042823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 35153369 - 35153261
Alignment:
Q  105 gggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacattattaaagaatagttaa 203  Q
    ||||||||  ||| |||||||||| |||||||||||| ||| |||||| |||  ||||||||| ||||| |||||||| ||||| |||||||||| | |     
T  35153369 gggcactaaataaagactttaaatagtaactttttataaaagtttgtgcaataaagtgcattgaaaattgaaaactttaacatttttaaagaataatgat 35153270  T
Q  204 ttaatttaa 212  Q
    |||||||||    
T  35153269 ttaatttaa 35153261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 37461460 - 37461544
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttt-tatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacatt 187  Q
    |||||| |||||||||| | |||||||||| |||| ||||||| ||||||||||| |||||||  ||||| ||||||||||||||    
T  37461460 ggggcattagttaaggattataaatggtaatttttttatgaaagtttgtgtaatcggtgcattaaaaattgaaaactttgacatt 37461544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 49951717 - 49951785
Alignment:
Q  143 aaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    ||||||||||||||| |||||||| ||||| |||||||||||||| | |||||||| ||| ||||||||    
T  49951717 aaaatttgtgtaatcggtgcattgaaaattgaaaactttgacattttaaaagaataattacttaattta 49951785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 52650697 - 52650785
Alignment:
Q  123 ttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||||| |||| |||||||||||| |||||||||||||| |||| ||||| |||| |||||||||  ||||||||| ||  ||||||||    
T  52650697 ttaaatagtaattttttatgaaaaattgtgtaatcagtgaattgaaaattgaaaattttgacatttgtaaagaataatttcttaattta 52650785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 53622421 - 53622313
Alignment:
Q  105 gggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacattattaaagaatagttaa 203  Q
    |||||||||||||| |||||||||| ||||||||| ||||||||||||||||  ||||   |||||||| |||| ||||||||| | ||| || | |||     
T  53622421 gggcactagttaagaactttaaatgataactttttctgaaaatttgtgtaataaagtgagctggaaattgaaaattttgacattttaaaaaaaaaattac 53622322  T
Q  204 ttaatttaa 212  Q
    |||||||||    
T  53622321 ttaatttaa 53622313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 20022309 - 20022234
Alignment:
Q  103 tggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaac 178  Q
    ||||||||| ||||||||| |||||| |||| ||||||||||| |||||  ||||| ||||||||||||| |||||    
T  20022309 tggggcactggttaaggaccttaaatagtaattttttatgaaagtttgtacaatcaatgcattggaaattgaaaac 20022234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 21687591 - 21687666
Alignment:
Q  122 tttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacattattaaagaa 196  Q
    |||||||||||||||||||| ||| ||||||||||  ||||||||| ||||| || ||||||| ||||||||||||    
T  21687591 tttaaatggtaactttttataaaagtttgtgtaataaagtgcattgaaaattgaacactttgatattattaaagaa 21687666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 49446581 - 49446648
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaat 171  Q
    |||||||||||||||| |||||||| ||||||| | |||||||| |||||||||| ||||| ||||||    
T  49446581 ggggcactagttaaggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcggaaat 49446648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 113 - 228
Target Start/End: Complemental strand, 17970917 - 17970805
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatt-aaaaactttgacattattaaagaatagttaattaattta 211  Q
    ||||| |||||||||||||||||||| || ||| ||   ||||||||||||||||||||| ||||||||||| ||| | || ||||| ||| |||||||     
T  17970917 gttaaagactttaaatggtaacttttcattaaagtt---gtaatcagtgcattggaaattgaaaaactttgatattttaaatgaataattacttaattt- 17970822  T
Q  212 attatgcttacagagtg 228  Q
    || ||||||| ||||||    
T  17970821 atcatgcttaaagagtg 17970805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 41370166 - 41370224
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatt 172  Q
    ||||||||||| ||| |||| |||||||||||||||||||||||| ||||||| |||||    
T  41370166 ttaaggactttgaatagtaagtttttatgaaaatttgtgtaatcaatgcattgaaaatt 41370224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 23136539 - 23136604
Alignment:
Q  148 ttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaat 213  Q
    ||||||||||||||||||||||||| |||||||| | ||| | |||||||| ||| ||||||||||    
T  23136539 ttgtgtaatcagtgcattggaaattgaaaacttttaaattttaaaagaataattacttaatttaat 23136604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 44570122 - 44570181
Alignment:
Q  134 ctttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaa 193  Q
    |||||||||||| |||||||||||| ||||||| |||||||||| ||| ||||| |||||    
T  44570122 ctttttatgaaagtttgtgtaatcaatgcattgaaaattaaaaaatttaacatttttaaa 44570181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 18939846 - 18939904
Alignment:
Q  94 tatgggaaatggggcactagttaaggactttaaatggtaactttttatgaaaatttgtg 152  Q
    ||||||||||| |||||||||||||||| ||||| | ||||||||||| ||| ||||||    
T  18939846 tatgggaaatgcggcactagttaaggaccttaaaagataactttttataaaagtttgtg 18939904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 3179003 - 3179072
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaacttt 181  Q
    ||||| |||| ||||| |||||||||||||||| ||||||||||  |||| |||||||||| ||||||||    
T  3179003 gttaaagactataaatagtaactttttatgaaagtttgtgtaataaagtgtattggaaattgaaaacttt 3179072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 38354473 - 38354558
Alignment:
Q  108 cactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaa 193  Q
    |||||| ||| ||| |||||||||||  |||||| ||| || |||||||||||| ||| |||||| |||| ||||||||| |||||    
T  38354473 cactagctaaagaccttaaatggtaaacttttattaaagttagtgtaatcagtgtattagaaattgaaaagtttgacatttttaaa 38354558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 251
Target Start/End: Complemental strand, 47937962 - 47937834
Alignment:
Q  123 ttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaattatgcttac 222  Q
    ||||||| ||| ||||||||||| |||||| || ||| |||| | ||||| ||||||||||| || |||||||||| |||  ||||||| | ||| |||     
T  47937962 ttaaatgataattttttatgaaagtttgtgcaaacagagcatagaaaattgaaaactttgacttttttaaagaataattacataatttagt-atgtttaa 47937864  T
Q  223 agagtggtcagg-acactcgttaacaagac 251  Q
    |||||  || || |||||||||||||||||    
T  47937863 agagtactccggcacactcgttaacaagac 47937834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 4392067 - 4391979
Alignment:
Q  124 taaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatt-aaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||||| ||| ||||||| ||||||||||||||||||| |||| ||||| |||   ||||||||| |||||||||| ||| | ||||||    
T  4392067 taaatgataaatttttataaaaatttgtgtaatcagtgtattgaaaattgaaattttttgacatttttaaagaataattactaaattta 4391979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 32175550 - 32175502
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtg 152  Q
    |||||||||||||| ||||||||||| ||||||||| ||||| ||||||    
T  32175550 ggggcactagttaaagactttaaatgataactttttgtgaaagtttgtg 32175502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 7996816 - 7996754
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaacttt 181  Q
    |||||||||||||||  ||| ||||||||||| ||||||||||     ||||||||||||||||||||    
T  7996816 ttaaggactttaaataataattttttatgaaagtttgtgtaat-----cattggaaattaaaaacttt 7996754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 24754030 - 24753975
Alignment:
Q  120 actttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaa 175  Q
    ||||||||| |||| ||||||||||| ||| || ||||| ||||||||||||||||    
T  24754030 actttaaatagtaaatttttatgaaagtttatgaaatcaatgcattggaaattaaa 24753975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 36721589 - 36721636
Alignment:
Q  119 gactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattg 166  Q
    |||||||||| |||| |||||||| ||||||||||||||| |||||||    
T  36721589 gactttaaatagtaagtttttatggaaatttgtgtaatcaatgcattg 36721636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 39767323 - 39767248
Alignment:
Q  107 gcactagttaaggactttaaatggtaacttttt-atgaaaatttgtgtaatcagtgcattggaaattaaaaacttt 181  Q
    ||||| ||||||||| | |||| |||| ||||| || ||| |||||||||| | ||||||||||||||||||||||    
T  39767323 gcactggttaaggacctcaaatagtaatttttttataaaagtttgtgtaattaatgcattggaaattaaaaacttt 39767248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 41468201 - 41468142
Alignment:
Q  105 gggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcat 164  Q
    ||||||||||||||| |||||||||||||||||| || |||||   |||||||| |||||    
T  41468201 gggcactagttaaggcctttaaatggtaacttttcataaaaatacatgtaatcaatgcat 41468142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 19652725 - 19652680
Alignment:
Q  130 gtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaa 175  Q
    |||| |||||||||||||||||| | ||| ||||||||||||||||    
T  19652725 gtaagtttttatgaaaatttgtgcattcaatgcattggaaattaaa 19652680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 31295930 - 31295885
Alignment:
Q  36 gtagtttattaaccaccatttcctaactccataaaactactaacta 81  Q
    ||||||| | ||||||||||| |||||||||||||||||| |||||    
T  31295930 gtagtttctaaaccaccattttctaactccataaaactacgaacta 31295885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 49795254 - 49795189
Alignment:
Q  113 gttaaggactttaaatggtaacttttt-atgaaaatttgtgtaatcagtgcattggaaattaaaaa 177  Q
    |||||||||||||||| |||| ||||| || ||| ||||||||||| |||||||| ||||| ||||    
T  49795254 gttaaggactttaaatagtaatttttttataaaagtttgtgtaatcggtgcattgaaaattgaaaa 49795189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 2063567 - 2063499
Alignment:
Q  130 gtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaata 198  Q
    ||||||||||||||||||||||||| | | | ||||||||||| ||   |||||| || ||||||||||    
T  2063567 gtaactttttatgaaaatttgtgtatttaatacattggaaattgaactgtttgacttttttaaagaata 2063499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 25115267 - 25115319
Alignment:
Q  120 actttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatt 172  Q
    ||||||||| |||| ||||||| |||| ||||||| ||| |||||||||||||    
T  25115267 actttaaatagtaagtttttataaaaagttgtgtattcactgcattggaaatt 25115319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 31263014 - 31262927
Alignment:
Q  123 ttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||||||  |||||||||| ||| |||||||| ||||| ||||  ||||  |||||||||||||| ||||| |||| ||| ||||||||    
T  31263014 ttaaatgacaactttttataaaagtttgtgtagtcagtacattcaaaatcgaaaactttgacatttttaaa-aataattacttaattta 31262927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 48551157 - 48551051
Alignment:
Q  105 gggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaat 204  Q
    ||||||||||||||||| | |||| |||||||||||| |||| |||||||||| |||||||| ||||| |||||||||||||| |||||||||| ||  |    
T  48551157 gggcactagttaaggacctcaaatagtaactttttataaaaaattgtgtaatcggtgcattgaaaattgaaaactttgacatttttaaagaataatttct 48551058  T
Q  205 taattta 211  Q
    |||||||    
T  48551057 taattta 48551051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 114 - 251
Target Start/End: Complemental strand, 45758037 - 45757899
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaat 213  Q
    |||||||| ||||||  ||  ||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||| ||  |||||||||     
T  45758037 ttaaggaccttaaataatatttttttatgaaagtttgtgtaatcagtgcattgtaaattgaaaactttgacatttttaaagaataattgcttaatttaa- 45757939  T
Q  214 tatgcttacagagtggtcag--gacactcgttaacaagac 251  Q
     ||||||| |||||| || |  ||||||||||||||||||    
T  45757938 catgcttaaagagtgatccggagacactcgttaacaagac 45757899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 20821412 - 20821314
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||| |||| | ||| |||||||||| ||| ||| ||||    
T  20821412 ttaaggactttaaatggtaactttttatgaaagtttgtgtaataaagtgcattggaaattaaaacctttaatatttttaaagaataattacttagttta 20821314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 14146208 - 14146135
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacatt 187  Q
    |||||||||||||||||||| |||||||  || ||||||||||||||||||| |||||| ||||||||||||||    
T  14146208 ttaaggactttaaatggtaaatttttatagaagtttgtgtaatcagtgcattagaaattgaaaactttgacatt 14146135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 24313670 - 24313562
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacattattaaagaatagtta 202  Q
    |||||||  ||||| ||||||||||| |||||||||||||||||||||||| |  | ||||||| ||||| |||||||||||||| |||||||||| ||     
T  24313670 ggggcaccggttaaagactttaaatgataactttttatgaaaatttgtgtagtaaaatgcattgaaaattgaaaactttgacatttttaaagaataattg 24313571  T
Q  203 attaattta 211  Q
     ||||||||    
T  24313570 tttaattta 24313562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 12140255 - 12140156
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaa-tttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    ||||| ||| |||||| |||||||||||| |||| ||||| |||||||| ||||||||||| |||||||||||||| | |||||||| ||| ||||||||    
T  12140255 gttaaagaccttaaatagtaactttttataaaaagtttgtataatcagtacattggaaattgaaaactttgacattttaaaagaataattatttaattta 12140156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 33072108 - 33072181
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacat 186  Q
    ||||||||| | ||||||||| ||||||| |||||||||||||| | ||||||||||||| |||||||||||||    
T  33072108 gttaaggacctgaaatggtaattttttataaaaatttgtgtaattaatgcattggaaattgaaaactttgacat 33072181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 251
Target Start/End: Original strand, 3026979 - 3027121
Alignment:
Q  111 tagttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatt 209  Q
    |||||||||||||||||| |||||||||||||||| |||||||| |  ||||||||||||| | ||| |||||| ||| ||||| || | ||| ||||||    
T  3026979 tagttaaggactttaaatagtaactttttatgaaagtttgtgtagtgaagtgcattggaaaatgaaacctttgatatttttaaataaaaattacttaatt 3027078  T
Q  210 taattatgcttacagagtggtcagga--cactcgttaacaagac 251  Q
    | |  ||||||| |||||| || |||  ||||||||||||||||    
T  3027079 t-agaatgcttaaagagtgctccggaggcactcgttaacaagac 3027121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 25317923 - 25317816
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaa 203  Q
    |||||||| ||||||||| |||||| |||| ||||||| ||| |||||||||||  ||||||||||||| |||||||| | ||| | |||||||| |||     
T  25317923 ggggcactggttaaggaccttaaatagtaaatttttataaaagtttgtgtaatcgatgcattggaaattgaaaacttttaaattttaaaagaataattac 25317824  T
Q  204 ttaattta 211  Q
    || |||||    
T  25317823 tttattta 25317816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 1511453 - 1511370
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacatt 187  Q
    ||||||||  |||||  ||||||| ||||||||||| ||||||||  |||||||| ||||||||||||| ||| ||||||||||    
T  1511453 ggggcactctttaagacctttaaaaggtaactttttttgaaaattaatgtaatcaatgcattggaaattgaaatctttgacatt 1511370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 37388494 - 37388417
Alignment:
Q  135 tttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaa 212  Q
    ||||||| |||||||||||||||| ||||||| ||| | |||| ||| ||||| |||||||||| ||| |||||||||    
T  37388494 tttttataaaaatttgtgtaatcaatgcattgaaaactgaaaaatttcacatttttaaagaataattacttaatttaa 37388417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 54911293 - 54911212
Alignment:
Q  130 gtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||||||||||||||| ||| |||||||| || |||| ||||| |||||||| ||||| | |||||||| ||| ||||||||    
T  54911293 gtaactttttatgaaagtttatgtaatcaatgtattgaaaatttaaaactttaacattttaaaagaataattatttaattta 54911212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 39652034 - 39651994
Alignment:
Q  105 gggcactagttaaggactttaaatggtaactttttatgaaa 145  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  39652034 gggcattagttaaggactttaaatggtaactttttatgaaa 39651994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 18399147 - 18399214
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaat 171  Q
    |||||| |||||||||  ||||||||||||||| | ||||||| ||||||||||| ||||| ||||||    
T  18399147 ggggcattagttaaggcttttaaatggtaacttatcatgaaaagttgtgtaatcaatgcatcggaaat 18399214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 41750755 - 41750829
Alignment:
Q  119 gactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaa 193  Q
    ||||||||||||||| || | || ||| || || |||||| ||||||| |||||||||| |||||||||||||||    
T  41750755 gactttaaatggtaagttgtgataaaacttagtataatcaatgcattgtaaattaaaaagtttgacattattaaa 41750829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 1829243 - 1829304
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaa 175  Q
    ||||||| || |||||||||||||||  ||||||||||||| ||||| ||||| ||||||||    
T  1829243 ttaaggatttaaaatggtaactttttgcgaaaatttgtgtattcagtacattgaaaattaaa 1829304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 22772979 - 22772872
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacattattaaagaatagtta 202  Q
    |||| ||| ||||||||||||||||  ||||||||| ||||| |||||  |||  | ||||||||||||| |||||||||| ||| |||  ||||| |||    
T  22772979 ggggtactcgttaaggactttaaatattaactttttgtgaaagtttgtagaataaattgcattggaaattgaaaactttgaaattgttatggaataatta 22772880  T
Q  203 attaattt 210  Q
     |||||||    
T  22772879 cttaattt 22772872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 25548203 - 25548254
Alignment:
Q  121 ctttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatt 172  Q
    ||||||||| ||| ||||||||||||| |||||||||| |||||| ||||||    
T  25548203 ctttaaatgataaatttttatgaaaatatgtgtaatcaatgcattagaaatt 25548254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 29612106 - 29612031
Alignment:
Q  137 tttatgaaaatttgtgtaatca-gtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    ||||||||| |||||||||| | |||||||||||||| |||||| | ||||| |||||||||| ||| ||| ||||    
T  29612106 tttatgaaagtttgtgtaataaagtgcattggaaattgaaaactgtcacatttttaaagaataattacttatttta 29612031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 45584343 - 45584422
Alignment:
Q  131 taactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaa 212  Q
    ||||||||||||||| |||||||||||| |  |||| |||||||||||||  | ||| | |||||||| ||| |||||||||    
T  45584343 taactttttatgaaagtttgtgtaatcaatatattgaaaattaaaaactt--atattttaaaagaataattacttaatttaa 45584422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 52340118 - 52340176
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaat 171  Q
    ||||||| |||||||||||||||| | || ||||| |||||||||| ||||| ||||||    
T  52340118 gttaaggcctttaaatggtaacttatcataaaaatatgtgtaatcaatgcatcggaaat 52340176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 27968307 - 27968262
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatca 158  Q
    ||||||| |||||||||||||||| | |||||||| ||||||||||    
T  27968307 gttaaggcctttaaatggtaacttatcatgaaaatatgtgtaatca 27968262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 46725776 - 46725692
Alignment:
Q  103 tggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacatt 187  Q
    ||||||||||||||| ||||||||||   |||||||| | ||||||||||||||  ||||||||| ||||| |||| ||| |||||    
T  46725776 tggggcactagttaacgactttaaataacaacttttt-taaaaatttgtgtaataaagtgcattgaaaattgaaaattttaacatt 46725692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 34759047 - 34758987
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcat 164  Q
    |||||||||||||||| |||||||| ||||||| | ||| |||| | |||||||| |||||    
T  34759047 ggggcactagttaagggctttaaatagtaacttatcatggaaatatatgtaatcaatgcat 34758987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 54911986 - 54912046
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcat 164  Q
    |||||||||||||||| || ||||||  ||||| | |||||||| |||||||||| |||||    
T  54911986 ggggcactagttaaggcctataaatgacaacttatcatgaaaatatgtgtaatcaatgcat 54912046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 14309071 - 14309184
Alignment:
Q  103 tggggcactagttaaggactttaaatgg--taactttt-tatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatag 199  Q
    ||||||||||||||||||| ||||||||  ||| |||| |||||||||||||||||| | ||||||||||||| |||||||||| ||| ||||||||||     
T  14309071 tggggcactagttaaggaccttaaatggagtaatttttttatgaaaatttgtgtaattaatgcattggaaattgaaaactttgatatttttaaagaataa 14309170  T
Q  200 ttaattaatttaat 213  Q
     || ||||||||||    
T  14309171 ctacttaatttaat 14309184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 21259415 - 21259514
Alignment:
Q  113 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaa 212  Q
    ||||| ||| ||||||| |||||||||||| || |||||||||||||||||||| |||||||||| ||||||||  |||||||||| ||  |||||||||    
T  21259415 gttaaagaccttaaatgataactttttatggaagtttgtgtaatcagtgcattgaaaattaaaaattttgacatctttaaagaataattttttaatttaa 21259514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 38594923 - 38595026
Alignment:
Q  108 cactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaa 207  Q
    |||| ||||||||||||||||| ||| ||||||||||||||| | |||| | ||||||||||||| |||| ||||||||| | |||||||| ||| ||||    
T  38594923 cactggttaaggactttaaatgataaatttttatgaaaatttatataattaatgcattggaaattgaaaattttgacattttaaaagaataattacttaa 38595022  T
Q  208 ttta 211  Q
    ||||    
T  38595023 ttta 38595026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 349 - 477
Target Start/End: Complemental strand, 29792125 - 29791991
Alignment:
Q  349 gatagaataaccaattcccattttagctcattgggccgttacaaatttgaca-----gctcttgataacagc-agctaacaagtccccaaattgatggtg 442  Q
    |||||||||||||||||| | ||||||| || |||||||||||| ||| |||     |||||| ||||||||  | |||||||| |||||||||| ||||    
T  29792125 gatagaataaccaattcctagtttagctgatcgggccgttacaatttttacaatgttgctcttaataacagctggttaacaagttcccaaattgacggtg 29792026  T
Q  443 agaacattcaaaggctcttcaacaagctgagtgac 477  Q
     |||||||||||  |||||||||||||||||||||    
T  29792025 tgaacattcaaacactcttcaacaagctgagtgac 29791991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 16636656 - 16636740
Alignment:
Q  109 actagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaa 193  Q
    ||||||||||||| ||||||||||||||||||| ||| |||||||||| ||||||||| ||||| | |||||||| ||| |||||    
T  16636656 actagttaaggaccttaaatggtaactttttataaaagtttgtgtaattagtgcattgaaaattgacaactttgatatttttaaa 16636740  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 212
Target Start/End: Original strand, 26453630 - 26453736
Alignment:
Q  105 gggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaat 204  Q
    |||||||| |||||||| |||||||||||  |||||| ||||||||||||| ||| |||||| ||||| |||| ||||||||| ||||| |||| ||| |    
T  26453630 gggcactaattaaggaccttaaatggtaaacttttataaaaatttgtgtaaccagcgcattgaaaattgaaaagtttgacatttttaaaaaata-ttact 26453728  T
Q  205 taatttaa 212  Q
    ||||||||    
T  26453729 taatttaa 26453736  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 107 - 212
Target Start/End: Complemental strand, 22601890 - 22601785
Alignment:
Q  107 gcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaatta 206  Q
    ||||||||||| ||| ||||||| ||| ||||||| ||||||||| ||||||||  |||| |||||||||| ||||| ||| ||||| |||| ||| |||    
T  22601890 gcactagttaaagaccttaaatgataaatttttataaaaatttgtataatcagtttattgaaaattaaaaattttgatatttttaaaaaataattactta 22601791  T
Q  207 atttaa 212  Q
    ||||||    
T  22601790 atttaa 22601785  T

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Target: chr5; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 26686667 - 26686748
Alignment:
Q  131 taactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaa 212  Q
    ||||||||||||||| |||||||||||  || |||| |||||||||||||| ||||| |||||||||| ||| |||||||||    
T  26686667 taactttttatgaaagtttgtgtaatcgatgtattgaaaattaaaaacttttacatttttaaagaatacttacttaatttaa 26686748  T

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Target: chr5; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 26956398 - 26956479
Alignment:
Q  131 taactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaatttaa 212  Q
    ||||||||||||||| |||||||||||  || |||| |||||||||||||| ||||| |||||||||| ||| |||||||||    
T  26956398 taactttttatgaaagtttgtgtaatcgatgtattgaaaattaaaaacttttacatttttaaagaatacttacttaatttaa 26956479  T

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Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 27325814 - 27325906
Alignment:
Q  106 ggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaata 198  Q
    |||||||||||||||| ||||||| ||| ||||||  ||||||  ||||| |||||||||| ||||| |||| ||||||||| ||||||||||    
T  27325814 ggcactagttaaggaccttaaatgataaatttttacaaaaattaatgtaaccagtgcattgaaaattgaaaagtttgacatttttaaagaata 27325906  T

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Target: chr5; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 17774272 - 17774378
Alignment:
Q  106 ggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaat-cagtgcattggaaattaaaaactttgacattattaaagaatagttaat 204  Q
    |||||| ||||| ||||||||||| |||||||||||| |||||||||||||  |||| |||||||||| |||| ||||| ||| |||||||||| ||| |    
T  17774272 ggcactggttaatgactttaaatgataactttttatg-aaatttgtgtaataaagtgtattggaaattgaaaaatttgatatttttaaagaataattact 17774370  T
Q  205 taatttaa 212  Q
    | ||||||    
T  17774371 tgatttaa 17774378  T

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Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 4695164 - 4695083
Alignment:
Q  130 gtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||| |||||||| || ||||| ||||||||||||||||||||||||||||| | ||| |||||||||| ||  ||||||||    
T  4695164 gtaattttttatggaagtttgtataatcagtgcattggaaattaaaaactttaatatttttaaagaataattttttaattta 4695083  T

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Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 22473553 - 22473481
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaa 176  Q
    |||||||||||||||| |||||||||||||||| |  ||||||| |||||||||| |||||  ||||||||||    
T  22473553 ggggcactagttaagggctttaaatggtaacttatcgtgaaaatatgtgtaatcaatgcatcagaaattaaaa 22473481  T

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Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 12221523 - 12221448
Alignment:
Q  136 ttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    ||||| |||||||| |||||||||| ||||| |||||||||||||||||| | ||||||||||  || ||||||||    
T  12221523 ttttacgaaaatttatgtaatcagtacattgaaaattaaaaactttgacaattttaaagaataactacttaattta 12221448  T

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Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 3263862 - 3263785
Alignment:
Q  107 gcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgac 184  Q
    ||||||||||||| |||||||||||||||| | || ||||| |||||||||| ||||| ||||||  ||| |||||||    
T  3263862 gcactagttaaggtctttaaatggtaacttatcattaaaatatgtgtaatcaatgcatcggaaatcgaaatctttgac 3263785  T

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Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 5758680 - 5758624
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagt 160  Q
    ||||||||  |||||||||||||||||||| ||||||||||| |||||||| |||||    
T  5758680 ggggcactttttaaggactttaaatggtaagtttttatgaaagtttgtgtattcagt 5758624  T

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Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 10051845 - 10051781
Alignment:
Q  107 gcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaat 171  Q
    ||||||||||||  |||||||||||||||| ||||||||| |||| |||||| ||||| ||||||    
T  10051845 gcactagttaagacctttaaatggtaacttattatgaaaagttgtataatcaatgcatcggaaat 10051781  T

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Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 27794854 - 27794926
Alignment:
Q  111 tagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttga 183  Q
    ||||||||||||||||||||||| ||||||| ||| ||||| ||||||  ||||| |||||| |||| |||||    
T  27794854 tagttaaggactttaaatggtaattttttataaaagtttgtataatcatcgcatttgaaattgaaaattttga 27794926  T

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Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 26432378 - 26432307
Alignment:
Q  106 ggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaa 177  Q
    |||| |||||||| || | ||||||||| ||||||||||| || ||||||||||| ||||||||||| ||||    
T  26432378 ggcattagttaagaacctaaaatggtaaatttttatgaaagttagtgtaatcagtacattggaaattgaaaa 26432307  T

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Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 8247180 - 8247118
Alignment:
Q  109 actagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaat 171  Q
    ||||||||||| |||||||||||||||| | ||||||| |||| |||||| ||||| ||||||    
T  8247180 actagttaaggtctttaaatggtaacttatcatgaaaagttgtataatcaatgcatcggaaat 8247118  T

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Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 5356286 - 5356346
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcat 164  Q
    |||| ||| ||||||| |||||||||||||||| | |||||||| |||||||||| |||||    
T  5356286 ggggtactggttaaggtctttaaatggtaacttatcatgaaaatatgtgtaatcaatgcat 5356346  T

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Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 10228426 - 10228342
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaata 198  Q
    |||| ||| |||||| |||||||||||  ||| ||||||||| |||||||| ||||||| |||||||| | ||| | ||||||||    
T  10228426 ttaaagacattaaatagtaactttttaaaaaagtttgtgtaaccagtgcatcggaaattgaaaacttttaaattttgaaagaata 10228342  T

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Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 187
Target Start/End: Original strand, 28207696 - 28207776
Alignment:
Q  108 cactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatca-gtgcattggaaattaaaaactttgacatt 187  Q
    ||||||||||| ||||||||| | || | ||||||||| |||||| ||| | ||||||| || ||||||||||||||||||    
T  28207696 cactagttaagaactttaaatagcaaatgtttatgaaagtttgtgcaataaagtgcatttgatattaaaaactttgacatt 28207776  T

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Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 31672530 - 31672462
Alignment:
Q  104 ggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaatt 172  Q
    ||||||||  |||||  ||||||| ||||||||||| ||||| ||| |||||||| |||||||||||||    
T  31672530 ggggcactctttaagacctttaaaaggtaactttttttgaaattttttgtaatcaatgcattggaaatt 31672462  T

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Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 31889708 - 31889666
Alignment:
Q  130 gtaactttttatgaaaatttgtgtaatcagtgcattggaaatt 172  Q
    |||||||||||||||||| |||||||||| |||||| ||||||    
T  31889708 gtaactttttatgaaaatatgtgtaatcaatgcattagaaatt 31889666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 14042571 - 14042474
Alignment:
Q  114 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    |||| |||||||||||  || |||| || ||||||||| |||||| |||||||||||| ||||  |||||| || ||||| |||| || |||| ||||    
T  14042571 ttaaagactttaaatgacaaattttaataaaaatttgtataatcaatgcattggaaatcaaaatatttgacttttttaaataataatttattatttta 14042474  T

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Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 28639669 - 28639576
Alignment:
Q  106 ggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatca-gtgcattggaaattaaaaactttgacattattaaagaata 198  Q
    |||||| | ||||||||||||||   || ||||||| ||| |||||||||| | |||||||||||  | |||||||| ||||| ||||||||||    
T  28639669 ggcactggataaggactttaaataacaattttttataaaagtttgtgtaataaagtgcattggaagctgaaaactttaacatttttaaagaata 28639576  T

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Target: scaffold0236 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 19686 - 19578
Alignment:
Q  103 tggggcactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagtta 202  Q
    ||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||  |  |||  ||||| |||||||| ||||| |||||||||| |||    
T  19686 tggggcactagttaaagaccttaaatgataactttttatgaaaatttgtgtaatcgatatattaaaaattgaaaactttaacatttttaaagaataatta 19587  T
Q  203 attaattta 211  Q
     ||||||||    
T  19586 cttaattta 19578  T

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Target: scaffold0010 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 26793 - 26712
Alignment:
Q  130 gtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaattta 211  Q
    ||||||||||| |||| |||||||||||||||||||| ||||| |||||||||||||| | ||| |||| ||| ||||||||    
T  26793 gtaactttttacgaaagtttgtgtaatcagtgcattgaaaattgaaaactttgacattttaaaataataattacttaattta 26712  T

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Target: scaffold0037 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 35376 - 35273
Alignment:
Q  108 cactagttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattaaaaactttgacattattaaagaatagttaattaa 207  Q
    |||||||||||||| ||| || |||| ||||||||||| ||| |||||||| |||| || ||||| |||| ||| ||||| ||||| |||| ||| || |    
T  35376 cactagttaaggacattagatagtaaatttttatgaaagtttatgtaatcattgcactgaaaattgaaaagtttaacatt-ttaaaaaataattacttga 35278  T
Q  208 tttaa 212  Q
    |||||    
T  35277 tttaa 35273  T

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