View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19945_low_5 (Length: 389)

Name: NF19945_low_5
Description: NF19945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19945_low_5
NF19945_low_5
[»] chr3 (15 HSPs)
chr3 (185-373)||(51397631-51397819)
chr3 (1-174)||(51397861-51398032)
chr3 (36-76)||(26965413-26965453)
chr3 (2-69)||(3152935-3153001)
chr3 (35-69)||(30431326-30431360)
chr3 (35-69)||(40048849-40048883)
chr3 (35-69)||(42791503-42791537)
chr3 (37-71)||(44854265-44854299)
chr3 (36-69)||(30186328-30186361)
chr3 (35-72)||(44645291-44645328)
chr3 (35-64)||(45567003-45567032)
chr3 (36-64)||(19373545-19373573)
chr3 (35-75)||(19552488-19552528)
chr3 (35-75)||(19897225-19897265)
chr3 (43-71)||(54933113-54933141)
[»] chr4 (17 HSPs)
chr4 (36-71)||(30022018-30022053)
chr4 (35-69)||(12241727-12241761)
chr4 (36-73)||(38510168-38510205)
chr4 (37-70)||(45520626-45520659)
chr4 (35-72)||(54042095-54042132)
chr4 (43-77)||(2728306-2728340)
chr4 (36-70)||(19451383-19451417)
chr4 (36-70)||(37624753-37624787)
chr4 (36-66)||(44650849-44650879)
chr4 (35-69)||(44855193-44855227)
chr4 (35-69)||(50203032-50203066)
chr4 (35-73)||(55126702-55126740)
chr4 (35-64)||(19904006-19904035)
chr4 (35-72)||(29519438-29519475)
chr4 (37-70)||(45043759-45043792)
chr4 (37-70)||(53814412-53814445)
chr4 (36-72)||(7905920-7905956)
[»] chr2 (10 HSPs)
chr2 (2-71)||(29795321-29795390)
chr2 (35-73)||(32228175-32228213)
chr2 (35-72)||(11188655-11188692)
chr2 (35-69)||(13561947-13561981)
chr2 (35-69)||(40987420-40987454)
chr2 (36-73)||(4840891-4840928)
chr2 (37-74)||(37038932-37038969)
chr2 (36-69)||(45081818-45081851)
chr2 (43-71)||(25383395-25383423)
chr2 (35-63)||(32254553-32254581)
[»] chr1 (6 HSPs)
chr1 (35-72)||(50094178-50094215)
chr1 (35-71)||(2610992-2611028)
chr1 (35-69)||(34047399-34047433)
chr1 (35-69)||(52125046-52125080)
chr1 (36-69)||(26352002-26352035)
chr1 (36-72)||(10842988-10843024)
[»] scaffold0015 (1 HSPs)
scaffold0015 (37-72)||(21248-21283)
[»] chr7 (5 HSPs)
chr7 (2-69)||(22297952-22298017)
chr7 (35-74)||(44453340-44453379)
chr7 (36-69)||(5723194-5723227)
chr7 (36-68)||(23935376-23935408)
chr7 (36-72)||(45948537-45948573)
[»] chr6 (4 HSPs)
chr6 (35-70)||(24163878-24163913)
chr6 (35-70)||(32429239-32429274)
chr6 (35-69)||(34519290-34519324)
chr6 (35-72)||(24163622-24163659)
[»] chr5 (6 HSPs)
chr5 (2-72)||(17674160-17674230)
chr5 (36-70)||(3306174-3306208)
chr5 (37-74)||(31041875-31041912)
chr5 (36-69)||(32963171-32963204)
chr5 (43-72)||(39504940-39504969)
chr5 (39-71)||(11970404-11970436)
[»] chr8 (5 HSPs)
chr8 (43-73)||(4760467-4760497)
chr8 (35-69)||(8382399-8382433)
chr8 (35-72)||(18673263-18673300)
chr8 (35-71)||(11165480-11165516)
chr8 (35-71)||(14234382-14234418)


Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 185 - 373
Target Start/End: Complemental strand, 51397819 - 51397631
Alignment:
Q  185 aaccatttagcgtatcttctgtattatggaaacattcgtctatcattgactttgtctgtcctcgctgtttggccaacgatactcaatcttgcttctgtta 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51397819 aaccatttagcgtatcttctgtattatggaaacattcgtctatcattgactttgtctgtcctcgctgtttggccaacgatactcaatcttgcttcggtta 51397720  T
Q  285 atcagcaaccatgtgttagctgtattcaaagagtacatgctaaggaagcaaaatgtgttgatgaagaattggaacgagaccgttaatta 373  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51397719 atcagcgaccatgtgttagctgtattcaaagagtacatgctaaggaagcaaaatgtgttgatgaagaattggaacgagaccgttaatta 51397631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 51398032 - 51397861
Alignment:
Q  1 aaaagtgacattcattttgaaacaannnnnnnnngctaaaatgacactcattttaaaacggatggagtattaaaaatttaaaaattataagtaaatggga 100  Q
    |||||||||||| ||||||||||||         ||||||| |||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||    
T  51398032 aaaagtgacatttattttgaaacaattttttttggctaaaacgacactcattttaaaacggatggagtattaaaaatttaaaaacta--agtaaatggga 51397935  T
Q  101 ataaaagaattctttaaatatttgaactggtcaaagtcattgctataagagacaaaatcactgtgagtaaatca 174  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  51397934 ataaaagaattctttaaatatttgaaccggtcaaagtcattgctataagagacaaaatcgctgtgagtaaatca 51397861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 26965453 - 26965413
Alignment:
Q  36 ctaaaatgacactcattttaaaacggatggagtattaaaaa 76  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  26965453 ctaaagtgacacttattttaaaacggatggagtattaaaaa 26965413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 3152935 - 3153001
Alignment:
Q  2 aaagtgacattcattttgaaacaannnnnnnnngctaaaatgacactcattttaaaacggatggagta 69  Q
    ||||||||||||||||||||||||         |||||||||||||||||||||||||||| ||||||    
T  3152935 aaagtgacattcattttgaaacaatttttttt-gctaaaatgacactcattttaaaacggagggagta 3153001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 30431326 - 30431360
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagta 69  Q
    |||||||||||||||||||||||||||| ||||||    
T  30431326 gctaaaatgacactcattttaaaacggagggagta 30431360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 40048883 - 40048849
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagta 69  Q
    |||||| ||||||||||||||||||||||||||||    
T  40048883 gctaaagtgacactcattttaaaacggatggagta 40048849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 42791503 - 42791537
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagta 69  Q
    |||||||||||||||||||| ||||||||||||||    
T  42791503 gctaaaatgacactcattttgaaacggatggagta 42791537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 44854299 - 44854265
Alignment:
Q  37 taaaatgacactcattttaaaacggatggagtatt 71  Q
    |||||| ||||||||||||||||||||||||||||    
T  44854299 taaaataacactcattttaaaacggatggagtatt 44854265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 30186361 - 30186328
Alignment:
Q  36 ctaaaatgacactcattttaaaacggatggagta 69  Q
    |||||| |||||||||||||||||||||||||||    
T  30186361 ctaaaacgacactcattttaaaacggatggagta 30186328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 44645328 - 44645291
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagtatta 72  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  44645328 gctaaaacgacactcattttgaaacggatggagtatta 44645291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 45567003 - 45567032
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatg 64  Q
    ||||||||||||||||||||||||||||||    
T  45567003 gctaaaatgacactcattttaaaacggatg 45567032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 19373573 - 19373545
Alignment:
Q  36 ctaaaatgacactcattttaaaacggatg 64  Q
    |||||||||||||||||||||||||||||    
T  19373573 ctaaaatgacactcattttaaaacggatg 19373545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 19552528 - 19552488
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagtattaaaa 75  Q
    |||||||||||||| ||||||||||||| |||||| |||||    
T  19552528 gctaaaatgacacttattttaaaacggaaggagtagtaaaa 19552488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 19897265 - 19897225
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagtattaaaa 75  Q
    |||||||||||||||||||||||| ||| ||||||| ||||    
T  19897265 gctaaaatgacactcattttaaaatggagggagtataaaaa 19897225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 54933141 - 54933113
Alignment:
Q  43 gacactcattttaaaacggatggagtatt 71  Q
    |||||||||||||||||||||||||||||    
T  54933141 gacactcattttaaaacggatggagtatt 54933113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 30022053 - 30022018
Alignment:
Q  36 ctaaaatgacactcattttaaaacggatggagtatt 71  Q
    ||||||||||||||||||||||||||||||||||||    
T  30022053 ctaaaatgacactcattttaaaacggatggagtatt 30022018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 12241727 - 12241761
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagta 69  Q
    |||||||||||||||||||||||||||||||||||    
T  12241727 gctaaaatgacactcattttaaaacggatggagta 12241761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 38510205 - 38510168
Alignment:
Q  36 ctaaaatgacactcattttaaaacggatggagtattaa 73  Q
    |||||| |||||||||||||||||||||||||||||||    
T  38510205 ctaaaacgacactcattttaaaacggatggagtattaa 38510168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 45520626 - 45520659
Alignment:
Q  37 taaaatgacactcattttaaaacggatggagtat 70  Q
    ||||||||||||||||||||||||||||||||||    
T  45520626 taaaatgacactcattttaaaacggatggagtat 45520659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 54042132 - 54042095
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagtatta 72  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  54042132 gctaaaacgacactcattttaaaacggatggagtatta 54042095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 2728340 - 2728306
Alignment:
Q  43 gacactcattttaaaacggatggagtattaaaaat 77  Q
    |||||||||||| ||||||||||||||||||||||    
T  2728340 gacactcattttgaaacggatggagtattaaaaat 2728306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 19451383 - 19451417
Alignment:
Q  36 ctaaaatgacactcattttaaaacggatggagtat 70  Q
    ||||||||||||||||||||||||||| |||||||    
T  19451383 ctaaaatgacactcattttaaaacggagggagtat 19451417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 37624753 - 37624787
Alignment:
Q  36 ctaaaatgacactcattttaaaacggatggagtat 70  Q
    |||||| ||||||||||||||||||||||||||||    
T  37624753 ctaaaacgacactcattttaaaacggatggagtat 37624787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 44650879 - 44650849
Alignment:
Q  36 ctaaaatgacactcattttaaaacggatgga 66  Q
    |||||||||||||||||||||||||||||||    
T  44650879 ctaaaatgacactcattttaaaacggatgga 44650849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 44855227 - 44855193
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagta 69  Q
    |||||||||||||||||||| ||||||||||||||    
T  44855227 gctaaaatgacactcattttgaaacggatggagta 44855193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 50203066 - 50203032
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagta 69  Q
    ||||||| |||||||||||||||||||||||||||    
T  50203066 gctaaaacgacactcattttaaaacggatggagta 50203032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 55126702 - 55126740
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagtattaa 73  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  55126702 gctaaaacgacattcattttaaaacggatggagtattaa 55126740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 19904006 - 19904035
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatg 64  Q
    ||||||||||||||||||||||||||||||    
T  19904006 gctaaaatgacactcattttaaaacggatg 19904035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 29519475 - 29519438
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagtatta 72  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  29519475 gctaaaacgacactcattttaaaacggatgaagtatta 29519438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 45043759 - 45043792
Alignment:
Q  37 taaaatgacactcattttaaaacggatggagtat 70  Q
    ||||| ||||||||||||||||||||||||||||    
T  45043759 taaaacgacactcattttaaaacggatggagtat 45043792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 53814445 - 53814412
Alignment:
Q  37 taaaatgacactcattttaaaacggatggagtat 70  Q
    ||||| ||||||||||||||||||||||||||||    
T  53814445 taaaacgacactcattttaaaacggatggagtat 53814412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 7905956 - 7905920
Alignment:
Q  36 ctaaaatgacactcattttaaaacggatggagtatta 72  Q
    |||||| |||||||||||||||||||| |||||||||    
T  7905956 ctaaaacgacactcattttaaaacggagggagtatta 7905920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 29795321 - 29795390
Alignment:
Q  2 aaagtgacattcattttgaaacaannnnnnnnngctaaaatgacactcattttaaaacggatggagtatt 71  Q
    ||||||||||||||||||||||||         |||||| ||||| ||||||||||||||||||||||||    
T  29795321 aaagtgacattcattttgaaacaaatatttttggctaaagtgacattcattttaaaacggatggagtatt 29795390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 32228175 - 32228213
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagtattaa 73  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  32228175 gctaaaacgacactcattttaaaacggatggagtattaa 32228213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 11188655 - 11188692
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagtatta 72  Q
    |||||||||||||||||||||||||||| |||||||||    
T  11188655 gctaaaatgacactcattttaaaacggaaggagtatta 11188692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 13561981 - 13561947
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagta 69  Q
    |||||||||||||||||||| ||||||||||||||    
T  13561981 gctaaaatgacactcattttgaaacggatggagta 13561947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 40987420 - 40987454
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagta 69  Q
    ||||||| |||||||||||||||||||||||||||    
T  40987420 gctaaaacgacactcattttaaaacggatggagta 40987454  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 4840891 - 4840928
Alignment:
Q  36 ctaaaatgacactcattttaaaacggatggagtattaa 73  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  4840891 ctaaaacgacactcattttgaaacggatggagtattaa 4840928  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 37038932 - 37038969
Alignment:
Q  37 taaaatgacactcattttaaaacggatggagtattaaa 74  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  37038932 taaaatgatactcattttaaaacagatggagtattaaa 37038969  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 45081851 - 45081818
Alignment:
Q  36 ctaaaatgacactcattttaaaacggatggagta 69  Q
    |||||| |||||||||||||||||||||||||||    
T  45081851 ctaaaacgacactcattttaaaacggatggagta 45081818  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 25383423 - 25383395
Alignment:
Q  43 gacactcattttaaaacggatggagtatt 71  Q
    |||||||||||||||||||||||||||||    
T  25383423 gacactcattttaaaacggatggagtatt 25383395  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 32254581 - 32254553
Alignment:
Q  35 gctaaaatgacactcattttaaaacggat 63  Q
    |||||||||||||||||||||||||||||    
T  32254581 gctaaaatgacactcattttaaaacggat 32254553  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 50094215 - 50094178
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagtatta 72  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  50094215 gctaaaacgacactcattttaaaacggatggagtatta 50094178  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 2610992 - 2611028
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagtatt 71  Q
    ||||||| |||||||||||||||||||||||||||||    
T  2610992 gctaaaacgacactcattttaaaacggatggagtatt 2611028  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 34047399 - 34047433
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagta 69  Q
    ||||||| |||||||||||||||||||||||||||    
T  34047399 gctaaaacgacactcattttaaaacggatggagta 34047433  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 52125080 - 52125046
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagta 69  Q
    ||||||| |||||||||||||||||||||||||||    
T  52125080 gctaaaacgacactcattttaaaacggatggagta 52125046  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 26352035 - 26352002
Alignment:
Q  36 ctaaaatgacactcattttaaaacggatggagta 69  Q
    |||||| |||||||||||||||||||||||||||    
T  26352035 ctaaaacgacactcattttaaaacggatggagta 26352002  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 10842988 - 10843024
Alignment:
Q  36 ctaaaatgacactcattttaaaacggatggagtatta 72  Q
    |||||| |||||||||||| |||||||||||||||||    
T  10842988 ctaaaacgacactcattttgaaacggatggagtatta 10843024  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 21248 - 21283
Alignment:
Q  37 taaaatgacactcattttaaaacggatggagtatta 72  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21248 taaaacgacactcattttaaaacggatggagtatta 21283  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 22298017 - 22297952
Alignment:
Q  2 aaagtgacattcattttgaaacaannnnnnnnngctaaaatgacactcattttaaaacggatggagta 69  Q
    ||||||||||||||||||||||||         ||||||| |||||||||||||||||||||||||||    
T  22298017 aaagtgacattcattttgaaacaattttttt--gctaaaacgacactcattttaaaacggatggagta 22297952  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 74
Target Start/End: Original strand, 44453340 - 44453379
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagtattaaa 74  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  44453340 gctaaaacgacactcattttaaaacggaaggagtattaaa 44453379  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 5723194 - 5723227
Alignment:
Q  36 ctaaaatgacactcattttaaaacggatggagta 69  Q
    |||||| |||||||||||||||||||||||||||    
T  5723194 ctaaaacgacactcattttaaaacggatggagta 5723227  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 23935408 - 23935376
Alignment:
Q  36 ctaaaatgacactcattttaaaacggatggagt 68  Q
    |||||| ||||||||||||||||||||||||||    
T  23935408 ctaaaacgacactcattttaaaacggatggagt 23935376  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 45948573 - 45948537
Alignment:
Q  36 ctaaaatgacactcattttaaaacggatggagtatta 72  Q
    |||||| |||||||||||||||||||||||| |||||    
T  45948573 ctaaaacgacactcattttaaaacggatggattatta 45948537  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 24163878 - 24163913
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagtat 70  Q
    |||||||||||||||||||||||||||| |||||||    
T  24163878 gctaaaatgacactcattttaaaacggagggagtat 24163913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 32429274 - 32429239
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagtat 70  Q
    ||||||| ||||||||||||||||||||||||||||    
T  32429274 gctaaaacgacactcattttaaaacggatggagtat 32429239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 34519290 - 34519324
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagta 69  Q
    ||||||| |||||||||||||||||||||||||||    
T  34519290 gctaaaacgacactcattttaaaacggatggagta 34519324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 24163659 - 24163622
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagtatta 72  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  24163659 gctaaaacgacactcactttaaaacggatggagtatta 24163622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 17674230 - 17674160
Alignment:
Q  2 aaagtgacattcattttgaaacaannnnnnnnngctaaaatgacactcattttaaaacggatggagtatta 72  Q
    ||||||||||||||||||||||||          ||||| ||||||||||||||||||||| |||||||||    
T  17674230 aaagtgacattcattttgaaacaattttatttgactaaagtgacactcattttaaaacggagggagtatta 17674160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 3306174 - 3306208
Alignment:
Q  36 ctaaaatgacactcattttaaaacggatggagtat 70  Q
    ||||||||||||||||||||||||||| |||||||    
T  3306174 ctaaaatgacactcattttaaaacggagggagtat 3306208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 31041912 - 31041875
Alignment:
Q  37 taaaatgacactcattttaaaacggatggagtattaaa 74  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  31041912 taaaatgacactcattttgaaacggatggagtaataaa 31041875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 32963171 - 32963204
Alignment:
Q  36 ctaaaatgacactcattttaaaacggatggagta 69  Q
    ||||| ||||||||||||||||||||||||||||    
T  32963171 ctaaagtgacactcattttaaaacggatggagta 32963204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 72
Target Start/End: Original strand, 39504940 - 39504969
Alignment:
Q  43 gacactcattttaaaacggatggagtatta 72  Q
    ||||||||||||||||||||||||||||||    
T  39504940 gacactcattttaaaacggatggagtatta 39504969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 11970404 - 11970436
Alignment:
Q  39 aaatgacactcattttaaaacggatggagtatt 71  Q
    |||||||||||||||||||||||||||| ||||    
T  11970404 aaatgacactcattttaaaacggatggaatatt 11970436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 73
Target Start/End: Complemental strand, 4760497 - 4760467
Alignment:
Q  43 gacactcattttaaaacggatggagtattaa 73  Q
    |||||||||||||||||||||||||||||||    
T  4760497 gacactcattttaaaacggatggagtattaa 4760467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 8382433 - 8382399
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagta 69  Q
    ||||||| |||||||||||||||||||||||||||    
T  8382433 gctaaaacgacactcattttaaaacggatggagta 8382399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 18673263 - 18673300
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagtatta 72  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  18673263 gctaaaacgacactcattttgaaacggatggagtatta 18673300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 11165516 - 11165480
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagtatt 71  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  11165516 gctaaagtgacactcattttaaaacggagggagtatt 11165480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 14234382 - 14234418
Alignment:
Q  35 gctaaaatgacactcattttaaaacggatggagtatt 71  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  14234382 gctaaaacgacactcattttaaaacggatgaagtatt 14234418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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