View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19945_low_8 (Length: 347)
Name: NF19945_low_8
Description: NF19945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19945_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 49686386 - 49686055
Alignment:
| Q |
1 |
tcatcactgtgtccatttcctttactagttaagacaagtagcggtaacacagtcaaatgagagaacaaaagatgtagtgcatgaactagagccatcctat |
100 |
Q |
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| T |
49686386 |
tcatcactgtgtccatttcctttactagttaagacaagtagcagtaacacagtcaaatgagagaacaaaagatgtagtgcatgaactagagccatcctat |
49686287 |
T |
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| Q |
101 |
tctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgacttggaaaattactacac |
200 |
Q |
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| T |
49686286 |
tctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgacttggaaaattactacac |
49686187 |
T |
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| Q |
201 |
aagtcatgtgaatttgtgtctatcacggactacaatgattttctatcatttatttgttttgaaattgaaactcactttttgctaaattctctgatactga |
300 |
Q |
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| T |
49686186 |
aagtcatgtgaatttgtgtctatcacggactacaatgattttctatcatttatttgttttgaaattgaaacccaatttttgctaaattctctgatactga |
49686087 |
T |
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| Q |
301 |
ttctctagaaaagtaaaacatgtactccttat |
332 |
Q |
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| T |
49686086 |
ttctctagaaaagtaaaacatgtactccttat |
49686055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 49690642 - 49690421
Alignment:
| Q |
5 |
cactgtgtccatttcctttactagttaagacaagtagcggtaacacagtcaaatgagagaacaaaag---------atgtagtgcatgaactagagccat |
95 |
Q |
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| T |
49690642 |
cactgtgtccatttcctttcctagttaagacaagtagcagtaacacagtcaaatgagagaacaaaaggaacctaaaatgtaaaacataaactaaagccat |
49690543 |
T |
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| Q |
96 |
cctattctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgacttggaaaat--- |
192 |
Q |
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| T |
49690542 |
tcaattgtgttaaacaatttgttccacactt-ttaatttgcacgacataaatatattctttgaagcaaattgacacgc--tagttgacttggaaaatgag |
49690446 |
T |
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| Q |
193 |
tactacacaagtcatgtgaatttgt |
217 |
Q |
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||| ||||||||| ||| ||||||| |
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| T |
49690445 |
taccacacaagtcttgtaaatttgt |
49690421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 49679019 - 49678948
Alignment:
| Q |
1 |
tcatcactgtgtccatttcctttactagttaagacaagtagcggtaacacagtcaaatgagagaacaaaaga |
72 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||||||| | |||||||||||||||||| |
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| T |
49679019 |
tcatcactgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaaga |
49678948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 49690378 - 49690319
Alignment:
| Q |
247 |
catttatttgttttgaaattgaaactcactttttgctaaattctctgatactgattctct |
306 |
Q |
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||||||||| |||||||||||||| ||||| ||||||||||||||| || | ||||||| |
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| T |
49690378 |
catttatttcttttgaaattgaaatccacttcttgctaaattctctgctaataattctct |
49690319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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