View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19946_high_5 (Length: 355)
Name: NF19946_high_5
Description: NF19946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19946_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 34017728 - 34017388
Alignment:
| Q |
1 |
acccgcctccttggccgcggcagcttcgccaaagtctacaaagctcattccctcctcgacaacgccaccaccgtcgccgtcaaaatcatcgacaagtcaa |
100 |
Q |
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| T |
34017728 |
acccgcctccttggccgcggcagcttcgccaaagtctacaaagctcattccctcctcgacaacgccaccaccgtcgccgtcaaaatcatcgacaagtcaa |
34017629 |
T |
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| Q |
101 |
aaaccgttgacgccgccatggagcctcgcattatccgtgaaatcgacgccatgcgccgtctccaacaccaccctaacatcctcaaaatccatgaagtcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34017628 |
aaaccgttgacgccgccatggagcctcgcattatccgtgaaatcgacgccatgcgccgtctccaacaccaccctaacatcctcaaaatccatgaagtcat |
34017529 |
T |
|
| Q |
201 |
ggctacaaaaaccaaaatccatcttattgttgaattcgccgccggtggtgagcttttctccgctctctcccgccgtggaagattctccgaacccaccgct |
300 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34017528 |
ggctacaaaaaccaaaatccatcttatcgttgaattcgccgccggtggtgagcttttctccgctctctcccgccgtggaagattctccgaatccaccgct |
34017429 |
T |
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| Q |
301 |
cgtttctactttcaacagcttgtctctgcgttacgtttctg |
341 |
Q |
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| T |
34017428 |
cgtttctactttcaacagcttgtctctgcgttacgtttctg |
34017388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 258
Target Start/End: Complemental strand, 15172209 - 15172021
Alignment:
| Q |
70 |
accgtcgccgtcaaaatcatcgacaagtcaaaaaccgttgacgccgccatggagcctcgcattatccgtgaaatcgacgccatgcgccgtctccaacacc |
169 |
Q |
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||||||||||| ||| |||||||||| || |||||||| || || | |||||||| || || | || ||||| ||||| ||||| || || ||| | | |
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| T |
15172209 |
accgtcgccgtaaaagtcatcgacaaatccaaaaccgtcgatgcatcaatggagccacgaatcgttcgcgaaattgacgcgatgcgtcggcttcaaaatc |
15172110 |
T |
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| Q |
170 |
accctaacatcctcaaaatccatgaagtcatggctacaaaaaccaaaatccatcttattgttgaattcgccgccggtggtgagcttttc |
258 |
Q |
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| T |
15172109 |
atccaaacattctcaaaatccatgaagttttagccactaaaactaagatctacctcatcgttgatttcgccggcggcggtgaacttttc |
15172021 |
T |
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