View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19946_high_6 (Length: 322)
Name: NF19946_high_6
Description: NF19946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19946_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 35 - 306
Target Start/End: Complemental strand, 13831705 - 13831423
Alignment:
| Q |
35 |
aaatgatttatttagaaaattttatacataatttattgaaagaaagaaattgaaataaatgttacgtataatttattcaattgatctttgaattttgttt |
134 |
Q |
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| T |
13831705 |
aaatgatttatttagaaaattttatacataatttattgaaagaaagaaattgaaataaatgttacgtataatttattcaattgatctttgaattttgttt |
13831606 |
T |
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| Q |
135 |
agaaaaaacacgtgtgctatttgtattttaagaagnnnnnnnngtagttgaaccttttaaaaataaaaagacaagatattaaacatctct---------- |
224 |
Q |
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| T |
13831605 |
agaaaaaacaagtgtgctatttgtattttaagaagaaaaaaaagtagttgaaccttttaaaaataaaaagacaagatattaaacatctctaaacaaatca |
13831506 |
T |
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| Q |
225 |
aaattttatgtgcaaactacaaaagtaggataattgtaaagagaaattcttaata-ccccattgttctctctcctgctttctt |
306 |
Q |
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| T |
13831505 |
aaattttatgtgcaaactacaaaagttggataattgtaaagagaaattcttaatacccccattgttctctctcctactttctt |
13831423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 13824768 - 13824703
Alignment:
| Q |
101 |
tataatttattcaattgatctttgaattttgtttaga-aaaaacacgtgtgctatttgtattttaa |
165 |
Q |
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| T |
13824768 |
tataatttattcaaaagatctttgaattttgtttagataaaaacaagtatgcaatttgtgttttaa |
13824703 |
T |
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