View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19946_high_7 (Length: 286)

Name: NF19946_high_7
Description: NF19946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19946_high_7
NF19946_high_7
[»] chr7 (10 HSPs)
chr7 (10-268)||(39346341-39346599)
chr7 (10-268)||(39360892-39361150)
chr7 (10-263)||(39335083-39335336)
chr7 (10-162)||(39541320-39541472)
chr7 (10-161)||(39550579-39550730)
chr7 (11-162)||(39567371-39567522)
chr7 (221-268)||(39541215-39541262)
chr7 (10-139)||(39577201-39577330)
chr7 (211-266)||(39550473-39550531)
chr7 (232-266)||(39567265-39567299)
[»] chr3 (1 HSPs)
chr3 (83-134)||(49770456-49770507)
[»] chr4 (1 HSPs)
chr4 (22-98)||(2884367-2884443)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 268
Target Start/End: Original strand, 39346341 - 39346599
Alignment:
Q  10 attattctactctctgatagtcacattatataccaaggtcctcgggaacacgtgcttgaatttttcgaatcaattggttttaaatgtccaaataggaaag 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39346341 attattctactctctgatagtcacattatataccaaggtcctcgggaacacgtgcttgaatttttcaaatcaattggttttaaatgtccaaataggaaag 39346440  T
Q  110 gagtggcagattttttgcaagaagtgagtgtcattgtgtcttctctcatttttatataaacaaagtttcatttatctataatatacgatagcaatttaaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39346441 gagtggcagattttttgcaagaagtgagtgtcattgtgtcttctctcatttttatataaacaaagtttcatttatctataatatacgatagcaatttaaa 39346540  T
Q  210 tttttctatggaaattattatgttataggtgacatcaaggaaagatcaagagcagtact 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39346541 tttttctatggaaattattatgttataggtgacatcaaggaaagatcaagagcagtact 39346599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 268
Target Start/End: Original strand, 39360892 - 39361150
Alignment:
Q  10 attattctactctctgatagtcacattatataccaaggtcctcgggaacacgtgcttgaatttttcgaatcaattggttttaaatgtccaaataggaaag 109  Q
    ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39360892 attatactactctctgatagtcacattatttaccaaggtccccgggaacacgtgcttgaatttttcgaatcaattggttttaaatgtccaaataggaaag 39360991  T
Q  110 gagtggcagattttttgcaagaagtgagtgtcattgtgtcttctctcatttttatataaacaaagtttcatttatctataatatacgatagcaatttaaa 209  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||| ||||| || ||||     
T  39360992 gagtggcagattttttgcaagaagtgtgtgtcattgtgtcttctctcatttttatataaacaaagtttcatttattaatattatatgatagaaacttaag 39361091  T
Q  210 tttttctatggaaattattatgttataggtgacatcaaggaaagatcaagagcagtact 268  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39361092 ttttgctatgaaaattattatgttataggtgacatcaaggaaagatcaagagcagtact 39361150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 10 - 263
Target Start/End: Original strand, 39335083 - 39335336
Alignment:
Q  10 attattctactctctgatagtcacattatataccaaggtcctcgggaacacgtgcttgaatttttcgaatcaattggttttaaatgtccaaataggaaag 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39335083 attattctactctctgatagtcatattatataccaaggtcctcgggaacacgtgcttgaatttttcgaatcaattggttttaaatgtccaaataggaaag 39335182  T
Q  110 gagtggcagattttttgcaagaagtgagtgtcattgtgtcttctctcatttttatataaacaaagtttcatttatctataatatacgatagcaatttaaa 209  Q
    ||||||| ||||||||||||||||||||| |||||| ||||||||||||||||  ||||||||||||| |||||| | || ||||   ||||||||||||    
T  39335183 gagtggcggattttttgcaagaagtgagtttcattgcgtcttctctcatttttgcataaacaaagttttatttatttttactatatagtagcaatttaaa 39335282  T
Q  210 tttttctatggaaattattatgttataggtgacatcaaggaaagatcaagagca 263  Q
    |||||| ||| ||| ||||||||||||||||||||||  |||||| ||||||||    
T  39335283 tttttccatgaaaactattatgttataggtgacatcagtgaaagaccaagagca 39335336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 39541472 - 39541320
Alignment:
Q  10 attattctactctctgatagtcacattatataccaaggtcctcgggaacacgtgcttgaatttttcgaatcaattggttttaaatgtccaaataggaaag 109  Q
    ||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||  |||||||||    
T  39541472 attattctactctctgatagtcacattatataccaaggtccccgtgagcacgtgcttgaatttttcgaatcaatcggttttaaatgtcctgataggaaag 39541373  T
Q  110 gagtggcagattttttgcaagaagtgagtgtcattgtgtcttctctcattttt 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39541372 gagtggcagattttttgcaagaagtgagtgtcattgtgtcttctctcattttt 39541320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 39550730 - 39550579
Alignment:
Q  10 attattctactctctgatagtcacattatataccaaggtcctcgggaacacgtgcttgaatttttcgaatcaattggttttaaatgtccaaataggaaag 109  Q
    ||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  39550730 attattctactctctgatagtcacattatataccaaggtccccgtgagcacgtgcttgaatttttcgaatcaattggttttaaatgtcctgataggaaag 39550631  T
Q  110 gagtggcagattttttgcaagaagtgagtgtcattgtgtcttctctcatttt 161  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  39550630 gagtggcagattttttgcaagaagtgagtgtcattgtgtcttttatcatttt 39550579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 11 - 162
Target Start/End: Complemental strand, 39567522 - 39567371
Alignment:
Q  11 ttattctactctctgatagtcacattatataccaaggtcctcgggaacacgtgcttgaatttttcgaatcaattggttttaaatgtccaaataggaaagg 110  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  39567522 ttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaattttttgaatcaatcggttttaaatgtccagataggaaagg 39567423  T
Q  111 agtggcagattttttgcaagaagtgagtgtcattgtgtcttctctcattttt 162  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39567422 agtggcagatttcttgcaagaagtgagtgtcattgtgtcttctctcattttt 39567371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 39541262 - 39541215
Alignment:
Q  221 aaattattatgttataggtgacatcaaggaaagatcaagagcagtact 268  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||    
T  39541262 aaattgttatgttataggtgacatcaaggaaagaccaagagcagtact 39541215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 39577330 - 39577201
Alignment:
Q  10 attattctactctctgatagtcacattatataccaaggtcctcgggaacacgtgcttgaatttttcgaatcaattggttttaaatgtccaaataggaaag 109  Q
    |||||||||||||||||  | |||||| | ||||| |||||| | |||||||||||||||||||| |  ||| | ||||| || |||||  | || |||     
T  39577330 attattctactctctgaggggcacattgtgtaccagggtccttgtgaacacgtgcttgaattttttgcttcattaggtttcaagtgtcctgaaagaaaat 39577231  T
Q  110 gagtggcagattttttgcaagaagtgagtg 139  Q
     ||||||||| ||||| |||||||| ||||    
T  39577230 cagtggcagactttttacaagaagtaagtg 39577201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 39550531 - 39550473
Alignment:
Q  211 ttttctatggaaattattatgtt---ataggtgacatcaaggaaagatcaagagcagta 266  Q
    |||| |||| |||||||||||||   ||||||||||||||||||||| |||||||||||    
T  39550531 ttttatatgaaaattattatgtttttataggtgacatcaaggaaagaccaagagcagta 39550473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 39567299 - 39567265
Alignment:
Q  232 ttataggtgacatcaaggaaagatcaagagcagta 266  Q
    ||||||||||||||||||||||| |||||||||||    
T  39567299 ttataggtgacatcaaggaaagaccaagagcagta 39567265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 49770456 - 49770507
Alignment:
Q  83 ttggttttaaatgtccaaataggaaaggagtggcagattttttgcaagaagt 134  Q
    ||||||| ||||||||| | ||||||||||| ||||||||||| ||||||||    
T  49770456 ttggtttcaaatgtccagagaggaaaggagtagcagattttttacaagaagt 49770507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 2884367 - 2884443
Alignment:
Q  22 tctgatagtcacattatataccaaggtcctcgggaacacgtgcttgaatttttcgaatcaattggttttaaatgtcc 98  Q
    |||||| |||| ||| | |||||||| ||||| |||||  | ||||||||||| |||||| ||||||| ||||||||    
T  2884367 tctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcc 2884443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University