View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19946_low_2 (Length: 576)
Name: NF19946_low_2
Description: NF19946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19946_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 17 - 569
Target Start/End: Original strand, 29422810 - 29423361
Alignment:
| Q |
17 |
ttttaaagttttattcctgttataataactcagaaggcaatgaaagcaccaaatgatacagtgattgagtgcaattcacaccataatttgatcataaaaa |
116 |
Q |
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| T |
29422810 |
ttttaaagttttattcctgttataataactcagaaggcaatgaaagcaccaaatgatacagtgattgattgcaattcacaccataatttgatcataaaaa |
29422909 |
T |
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| Q |
117 |
gagtcacagttagcagattaatagaactaactaaataacatcactatcaactgataacagaaactgaaatatagaagctgcaacacccctccaaaattgg |
216 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29422910 |
gagtcacagttggcagattaatagaactaactaaataacatcactatcaactgataacagaaactgaaatatagaagctgcaacacccctccaaagttgg |
29423009 |
T |
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| Q |
217 |
aatttgtatgcctaacgttccaagtttggattggagaccggtgaagcgaccaagaactaattggtgtttacacagttgatgtaacatatttacactatta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
29423010 |
aatttgtatgcctaacgttccaagtttggattggagaccggtgaagcgaccaagaactaattggtgtttacacagttgctgtaacatattttcactatta |
29423109 |
T |
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| Q |
317 |
gttattgatttcatgatatacctttaatgatgaatggtaatgcaagtgataaaagaccaaagctaaaacagaaagtactttatgaccatacccaagacaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29423110 |
gttattgatttcatgatatacctttaatgatgaatggtaatgcaagtgataaaagaccaaagctaaaacagaaagtactttatgaccatacccaagataa |
29423209 |
T |
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| Q |
417 |
tacctctccccctcctctctctcttcataatttatccatgttactgttttgtgtagtagaaaaaatatttttcttagaaatttattgattaattaggcaa |
516 |
Q |
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| T |
29423210 |
tacctctcaccctcctctctctcttcataatttatccatgttactgtttagtgtagtagaaaaaatatttttcttagaaatttattgattaattaggcaa |
29423309 |
T |
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| Q |
517 |
tatttgtactactaaccgaaactttataccccatacgtacttaattcttctca |
569 |
Q |
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| T |
29423310 |
tatttgtactatgaaccaaaactttata-cccatacgtactgaattcttctca |
29423361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 132 - 232
Target Start/End: Original strand, 29459112 - 29459219
Alignment:
| Q |
132 |
gattaatagaactaactaaataacatcactatcaactgataacagaaactg------aaatatagaagctgcaaca--cccctccaaaattggaatttgt |
223 |
Q |
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||||||||||||||||||| |||||| | |||||||||||||||||||||| | ||||||| ||||||||| |||||| ||| ||||||||||| |
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| T |
29459112 |
gattaatagaactaactaa-taacatgattatcaactgataacagaaactgtgaaatatatatagaggctgcaacatccccctcaaaagttggaatttgt |
29459210 |
T |
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| Q |
224 |
atgcctaac |
232 |
Q |
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|| |||||| |
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| T |
29459211 |
atacctaac |
29459219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 528
Target Start/End: Complemental strand, 13574285 - 13574225
Alignment:
| Q |
468 |
tgtagtagaaaaaatatttttcttagaaatttattgattaattaggcaatatttgtactac |
528 |
Q |
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||||||||||||||| ||||||||| ||||||||| ||||||| || ||||| ||||||| |
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| T |
13574285 |
tgtagtagaaaaaatgtttttcttaaaaatttattaattaatttggtaatataagtactac |
13574225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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