View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19946_low_3 (Length: 559)
Name: NF19946_low_3
Description: NF19946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19946_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 14 - 475
Target Start/End: Complemental strand, 37894267 - 37893806
Alignment:
| Q |
14 |
caattattacacatgcagataattcttgtatcaataccgtacttattgacatcataacacaattgagttgtaattaatcaaattacaactcttggttttt |
113 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37894267 |
caattattacacatgctgataattcttctatcaataccgtacttattgacatcataacacaattgagttgtaattaatcaaattacaactcttggttttt |
37894168 |
T |
|
| Q |
114 |
gtgtcctcctgnnnnnnntgaattaattacattcttaacatagagaccaaacagcaagaccaaaaacacaagcaccaacaaattaaccagcttcttctgc |
213 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37894167 |
gtgtcctcctgaaaaaaatgaattaattacattcttaacatagagaccaaacagcaagaccaaaaacacaagcaccaacaaattaaccagcttcttctgc |
37894068 |
T |
|
| Q |
214 |
ttcttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctgtcttgaaaccatttccatagtcaatgacnnnnnnncagcaacttttg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37894067 |
ttcttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctgtcttgaaaccatttccatagtcaatgactttttttcagcaacttttg |
37893968 |
T |
|
| Q |
314 |
atgcaactttgttattcacatcatcaatatcttcttttaattcctcagctttaccttttcccttcctttgagacacttcttcaatttctttctttggttc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37893967 |
atgcaactttgttattcacatcatcaatatcttcttttaattcctcagctttaccttttcccttcctttgagacacttcttcaatttctttctttggttc |
37893868 |
T |
|
| Q |
414 |
ttgttgcactacttgttttttctgatcagaaacttgaggagcagtgtttggtttctgaggaa |
475 |
Q |
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| T |
37893867 |
ttgttgcactacttgttttttctgatcagaaacttgaggagcagtgtttggtttctgaggaa |
37893806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 15 - 475
Target Start/End: Complemental strand, 37189366 - 37188904
Alignment:
| Q |
15 |
aattattacacatgcagataattcttgtatcaataccgtacttattgacatcataacacaattgagttgtaattaatcaaattacaactcttggtttttg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
37189366 |
aattattacacatgcagataattcttgtatcaataccgtacttattgacatgataacacaattgagttgaaattaatcaa-ttacaactcttggtttttg |
37189268 |
T |
|
| Q |
115 |
tgtcctcctgnnnnnnn----tgaattaattacattcttaacatagagaccaaacagcaagaccaaaaacacaagcaccaacaaattaaccagcttcttc |
210 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189267 |
tgtcctcctcaagaaaaaaaatgaattaattacattcttaacatagagaccaaacagcaagaccaaaaacacaagcaccaacaaattaaccagcttcttc |
37189168 |
T |
|
| Q |
211 |
tgcttcttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctgtcttgaaaccatttccatagtcaatgacnnnnnnncagcaactt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
37189167 |
tgcttcttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctgtcttgaaaccatttccatagtcaatgac-ttttttcgtatactt |
37189069 |
T |
|
| Q |
311 |
ttgatgcaactttgttattcacatcatcaatatcttcttttaattcctcagctttaccttttcccttcctttgagacacttcttcaatttctttctttgg |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37189068 |
ttgatgcaactttgttattcacatcatcaatatcttcttttaattcctcagctttaccttttcccttcctttgagacacttcttcaatttctttgtttgg |
37188969 |
T |
|
| Q |
411 |
ttcttgttgcactacttgttttttctgatcagaaacttgaggagcagtgtttggtttctgaggaa |
475 |
Q |
| |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37188968 |
ttcttgatgtactacttgttttttctgatcagaaacttgaggagcagtgtttggtttctgaggaa |
37188904 |
T |
|
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