View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19946_low_4 (Length: 428)

Name: NF19946_low_4
Description: NF19946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19946_low_4
NF19946_low_4
[»] chr4 (11 HSPs)
chr4 (15-410)||(10482462-10482864)
chr4 (256-410)||(10468323-10468476)
chr4 (129-239)||(10468839-10468949)
chr4 (15-111)||(10468981-10469077)
chr4 (347-410)||(10475494-10475557)
chr4 (338-410)||(8437023-8437095)
chr4 (344-410)||(829345-829411)
chr4 (344-410)||(8447383-8447449)
chr4 (330-410)||(10484716-10484796)
chr4 (347-410)||(10464559-10464622)
chr4 (344-410)||(8443184-8443249)
[»] chr1 (1 HSPs)
chr1 (297-410)||(50645187-50645298)
[»] chr3 (3 HSPs)
chr3 (57-188)||(25914299-25914430)
chr3 (344-410)||(25901011-25901077)
chr3 (345-410)||(25915030-25915095)
[»] chr8 (1 HSPs)
chr8 (344-410)||(42846160-42846226)
[»] chr2 (1 HSPs)
chr2 (344-410)||(25377304-25377370)
[»] chr5 (1 HSPs)
chr5 (344-410)||(37935357-37935423)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 15 - 410
Target Start/End: Complemental strand, 10482864 - 10482462
Alignment:
Q  15 cataggtatgtcactaaattggagtaacaggaacaagaaaataaaattcatactaaacaatcaaaaccactagggagatgctccagatacaagcaaaatt 114  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| ||||||||||||||||||||||| |||| |||||||||||    
T  10482864 cataggtatgtcactaaattggagtaacagtaacaagaaaatcaaattcatactgaacattcaaaaccactagggagatgctcaagatgcaagcaaaatt 10482765  T
Q  115 cattctcatggaatagctccaaattgaaaagtaaaatggacataatgtgtgcatcttgcaagtcattgagattttgcggcaaacaccattgtacgcgtca 214  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10482764 cattgtcatggaatagctccaaattgaaaagtaaattggacataatgtgtgcatcttgcaagtcattgagattttgcggcaaacaccattgtacgcgtca 10482665  T
Q  215 tgtttcctcaccaaaatcctac---aagtcaacagttaattaacaatgataaagcaagacaaaacattaaccatatataacacaatctattattataaa- 310  Q
    |||||||||||||||| |||||   ||| |||| ||||   || |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||     
T  10482664 tgtttcctcaccaaaaccctacaagaagccaacggtta---aataatggtaaaggaaggcaaaacattaaccatatataacacaatctattattataaac 10482568  T
Q  311 ------ctgaaaatgattataaagtaacatgcataaaggaacataaattcaaacaagtaatacgtggaagagaaactcactttcaatgagtcgaaaccaa 404  Q
          ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10482567 tgaagtctgaaaaggattttaaagtaacatgcataaaggaacataaattcaaacaagtaatatgtggaagagaaactcactttcaatgagtcgaaaccaa 10482468  T
Q  405 actttc 410  Q
    ||||||    
T  10482467 actttc 10482462  T

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Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 256 - 410
Target Start/End: Complemental strand, 10468476 - 10468323
Alignment:
Q  256 aatgataaagcaagacaaaacattaaccatatataacacaatctattattataaactgaaaatgattataaagtaacatgcataaaggaacataaattca 355  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||    
T  10468476 aatgataaagcaaggcaaaacattaaccatatataacacaatctattattataaactgaaaaggattttaaagtaacatgcataaaggaacat-aattca 10468378  T
Q  356 aacaagtaatacgtggaagagaaactcactttcaatgagtcgaaaccaaactttc 410  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  10468377 aacaagtaatatgtggaagagaaactcactttcaatgagtcaaaaccaaactttc 10468323  T

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Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 10468949 - 10468839
Alignment:
Q  129 agctccaaattgaaaagtaaaatggacataatgtgtgcatcttgcaagtcattgagattttgcggcaaacaccattgtacgcgtcatgtttcctcaccaa 228  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10468949 agctccaaattgaaaagcaaaatggacataatgtctgcatcttgcaagtcattgagattttgcggcaaacaacattgtacgcgtcatgtttcctcaccaa 10468850  T
Q  229 aatcctacaag 239  Q
    |||||||||||    
T  10468849 aatcctacaag 10468839  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 10469077 - 10468981
Alignment:
Q  15 cataggtatgtcactaaattggagtaacaggaacaagaaaataaaattcatactaaacaatcaaaaccactagggagatgctccagatacaagcaaa 111  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||| ||| |||||||| ||||    
T  10469077 cataggtatgtcactagattggagtaacagtaacaagaaaatcaaattcatactaaacattcaaaaccactagggagatactctagatacaatcaaa 10468981  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 10475557 - 10475494
Alignment:
Q  347 ataaattcaaacaagtaatacgtggaagagaaactcactttcaatgagtcgaaaccaaactttc 410  Q
    |||||||||||||||||||| ||||||||||||||||||||||| | |||||||| ||||||||    
T  10475557 ataaattcaaacaagtaatatgtggaagagaaactcactttcaacgtgtcgaaactaaactttc 10475494  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 410
Target Start/End: Original strand, 8437023 - 8437095
Alignment:
Q  338 taaaggaacataaattcaaacaagtaatacgtggaagagaaactcactttcaatgagtcgaaaccaaactttc 410  Q
    ||||| |||| ||||||||| |||||||| |||||| |||||||||| ||||| |||||||||||||||||||    
T  8437023 taaagtaacaaaaattcaaaaaagtaatatgtggaatagaaactcacattcaacgagtcgaaaccaaactttc 8437095  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 410
Target Start/End: Original strand, 829345 - 829411
Alignment:
Q  344 aacataaattcaaacaagtaatacgtggaagagaaactcactttcaatgagtcgaaaccaaactttc 410  Q
    ||||||||||||||||||| ||| ||| ||||||||||||||||||  || ||||||||||||||||    
T  829345 aacataaattcaaacaagtcatatgtgaaagagaaactcactttcatagaatcgaaaccaaactttc 829411  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 410
Target Start/End: Original strand, 8447383 - 8447449
Alignment:
Q  344 aacataaattcaaacaagtaatacgtggaagagaaactcactttcaatgagtcgaaaccaaactttc 410  Q
    |||| ||||| |||||||||||| |||||| |||||||||| ||||| |||||||||||||||||||    
T  8447383 aacaaaaattaaaacaagtaatatgtggaatagaaactcacattcaacgagtcgaaaccaaactttc 8447449  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 10484796 - 10484716
Alignment:
Q  330 aacatgcataaaggaacataaattcaaacaagtaatacgtggaagagaaactcactttcaatgagtcgaaaccaaactttc 410  Q
    ||||||||| ||| |  |||||||||||||||||||| |||||||||| |||||||||||| | |||||||| | ||||||    
T  10484796 aacatgcatgaagtagtataaattcaaacaagtaatatgtggaagagacactcactttcaacgtgtcgaaactagactttc 10484716  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 10464622 - 10464559
Alignment:
Q  347 ataaattcaaacaagtaatacgtggaagagaaactcactttcaatgagtcgaaaccaaactttc 410  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| | |||||||| | ||||||    
T  10464622 ataaattctaacaagtaatatgtggaagagaaactcactttcaacgtgtcgaaactagactttc 10464559  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 410
Target Start/End: Original strand, 8443184 - 8443249
Alignment:
Q  344 aacataaattcaaacaagtaatacgtggaagagaaactcactttcaatgagtcgaaaccaaactttc 410  Q
    |||| |||||||||||||||| | |||||| |||||||||| ||||| ||| |||||||||||||||    
T  8443184 aacaaaaattcaaacaagtaa-atgtggaatagaaactcacattcaacgaggcgaaaccaaactttc 8443249  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 410
Target Start/End: Original strand, 50645187 - 50645298
Alignment:
Q  297 tctattattataaactgaaaatgattataaagtaacatgcataaaggaacataaattcaaacaagtaatacgtggaagagaaactcactttcaatgagtc 396  Q
    |||| |||||| |||||| || |||| ||||| ||||| ||| ||| ||| ||||||||||||||||||  |||||||||||||||||||||||||||||    
T  50645187 tctactattattaactgacaaggattttaaagcaacatacatgaagaaacgtaaattcaaacaagtaat--gtggaagagaaactcactttcaatgagtc 50645284  T
Q  397 gaaaccaaactttc 410  Q
    | ||| ||||||||    
T  50645285 ggaactaaactttc 50645298  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 25914299 - 25914430
Alignment:
Q  57 aaaattcatactaaacaatcaaaaccactagggagatgctccagatacaagcaaaattcattctcatggaatagctccaaattgaaaagtaaaatggaca 156  Q
    ||||||||| || || |||||||||| ||||| | || || ||| ||||| | ||||||| |||||||||||| | |||||||||||||||||| ||  |    
T  25914299 aaaattcatgctgaataatcaaaacctctaggcacatactgcaggtacaatcgaaattcaatctcatggaataaccccaaattgaaaagtaaaacggcaa 25914398  T
Q  157 taatgtgtgcatcttgcaagtcattgagattt 188  Q
    |||||| || ||||||||| ||||| ||||||    
T  25914399 taatgtatgtatcttgcaactcattcagattt 25914430  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 344 - 410
Target Start/End: Original strand, 25901011 - 25901077
Alignment:
Q  344 aacataaattcaaacaagtaatacgtggaagagaaactcactttcaatgagtcgaaaccaaactttc 410  Q
    ||||||||||| ||||||||||| | | |||||||||||||||||||  ||| ||||||||||||||    
T  25901011 aacataaattctaacaagtaatatgagaaagagaaactcactttcaactagttgaaaccaaactttc 25901077  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 410
Target Start/End: Original strand, 25915030 - 25915095
Alignment:
Q  345 acataaattcaaacaagtaatacgtggaagagaaactcactttcaatgagtcgaaaccaaactttc 410  Q
    |||||||||| | ||||||||| |   |||||||||||||||||||  ||| ||||||||||||||    
T  25915030 acataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttc 25915095  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 410
Target Start/End: Original strand, 42846160 - 42846226
Alignment:
Q  344 aacataaattcaaacaagtaatacgtggaagagaaactcactttcaatgagtcgaaaccaaactttc 410  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||||||||||| ||| ||||||||    
T  42846160 aacataaattcaaacaagtaatatgtggaagagacgctcactttcaatgagtcggaactaaactttc 42846226  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 410
Target Start/End: Complemental strand, 25377370 - 25377304
Alignment:
Q  344 aacataaattcaaacaagtaatacgtggaagagaaactcactttcaatgagtcgaaaccaaactttc 410  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||| |||||||| |||||| ||||||    
T  25377370 aacattaattcaatcaagtaatatgtggaagagaaactcacttttaatgagtcaaaaccatactttc 25377304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 410
Target Start/End: Complemental strand, 37935423 - 37935357
Alignment:
Q  344 aacataaattcaaacaagtaatacgtggaagagaaactcactttcaatgagtcgaaaccaaactttc 410  Q
    ||||| ||||| | ||||||||| | |||||||| ||||||||||| ||||||| ||||||||||||    
T  37935423 aacatgaattctagcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttc 37935357  T

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