View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19947_high_2 (Length: 595)
Name: NF19947_high_2
Description: NF19947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19947_high_2 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 285 - 595
Target Start/End: Original strand, 42325363 - 42325673
Alignment:
| Q |
285 |
ggacagacacatagcgtgtttgtgtgagtatgtctgataatagaaaacaacaaaaaatatatgtataccagtgtatagaaggacctcatgtcaccaccat |
384 |
Q |
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| T |
42325363 |
ggacagacacatagcgtgtttgtgtgagtatgtctgataatagaaaacaacaaaaaatatatgtataccagtgtatagaaggacctcatgtcaccaccat |
42325462 |
T |
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| Q |
385 |
caatctcaactttgggtttggtgttgatagtggaagggaaaaactcatggccattgaagacttgcttcttgttgtaactcacagtcattttcatgcttgt |
484 |
Q |
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| T |
42325463 |
caatctcaactttgggtttggtgttgatagtggaagggaaaaactcatggccattgaagacttgcttcttgttgtaactcacagtcattttcatgcttgt |
42325562 |
T |
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| Q |
485 |
ggtaaaggaatcaagaacttctcctatcactcttccaacaatgagtggttcttgagacattcttgccatttcacaaaagagtgaaaaagagaaaagaaag |
584 |
Q |
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| T |
42325563 |
ggtaaaggaatcaagaacttctcctatcactcttccaacaatgagtggttcttgagacattcttgccatttcacaaaagagtgaaaaagagaaaagaaat |
42325662 |
T |
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| Q |
585 |
ttgagtggaaa |
595 |
Q |
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| T |
42325663 |
ttgagtggaaa |
42325673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 42325073 - 42325322
Alignment:
| Q |
17 |
ggccaggaacatcagggtctgtcatcacctacaccaaccaaatatgtatatattagctcagtcatttaggttttgtcaataccattccaataaagcacaa |
116 |
Q |
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| T |
42325073 |
ggccaggaacatcagggtctgtcatcacctacaccaaccaaatatgtatatattagctcagtcatttaggttttgtcaataccattccaataaagcacaa |
42325172 |
T |
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| Q |
117 |
atgatagttgttagtttgttagagagagggatgtttgatgttgtgagagattaaacaatatgaaactaattaaacaaatctctgactatatctaacaagg |
216 |
Q |
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| T |
42325173 |
atgatagttgttagtttgttagagagatggatgtttgatgttgtgagagattaaacaatatgaaactaattaaacaaatctctgactatatctaacaagg |
42325272 |
T |
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| Q |
217 |
tgaaatatgtttagcgaag---attgaactctgaaccctgcatataaata |
263 |
Q |
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| T |
42325273 |
tgaaatatgtttagcgaagaatattgaactctgaaccctgcatataaata |
42325322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 369 - 478
Target Start/End: Original strand, 36278866 - 36278975
Alignment:
| Q |
369 |
ctcatgtcaccaccatcaatctcaactttgggtttggtgttgatagtggaagggaaaaactcatggccattgaagacttgcttcttgttgtaactcacag |
468 |
Q |
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| T |
36278866 |
ctcatatcaccaccatgaatctgaactttaggtttagtggtaactgaggaaggaaaaaactcatgaccattgtaaacttgcttagtgttgtaagtgacag |
36278965 |
T |
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| Q |
469 |
tcattttcat |
478 |
Q |
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| T |
36278966 |
acattttcat |
36278975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 532
Target Start/End: Original strand, 26206495 - 26206592
Alignment:
| Q |
435 |
ccattgaagacttgcttcttgttgtaactcacagtcattttcatgcttgtggtaaaggaatcaagaacttctcctatcactcttccaacaatgagtgg |
532 |
Q |
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| T |
26206495 |
ccattgaagatttctttgttgttgtaagtcacagtcatttttgtggttggggtaaaatagtcaataacatctcctatcactctcccaagaattagtgg |
26206592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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