View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19947_high_25 (Length: 238)
Name: NF19947_high_25
Description: NF19947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19947_high_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 45476337 - 45476124
Alignment:
| Q |
1 |
gtagccttcggcggcgaagacaccaccttgttcatgacgggggagtatgttacggatggttttggaacgagtgagagcttggtggatctccatggaagcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45476337 |
gtagccttcggcggcgaagacaccaccttgttcgtgacgggggagtatgttacggatggttttggaacgggtgagagcttggtggatctccatggaagcg |
45476238 |
T |
|
| Q |
101 |
ccgccagggtaagcgaagacgttggtaacgccttcgcgttctaaggcttcaacgagaatgtcggagccttttcggggttgggaggaggagaaacgagagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45476237 |
ccgccagggtaagcgaagacgttggtaacgccttcgcgttctaaggcttcaacgagaatgtcggagccttttcggggttgggtggaggagaaacgagagg |
45476138 |
T |
|
| Q |
201 |
tgaaaggctcatcg |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45476137 |
tgaaaggctcatcg |
45476124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 9934366 - 9934178
Alignment:
| Q |
23 |
ccaccttgttcatgacgggggagtatgttacggatggttttggaacgagtgagagcttggtggatctccatggaagcgccgccagggtaagcgaagacgt |
122 |
Q |
| |
|
||||||||||| || ||||| |||||||| || || |||||||| || || ||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
9934366 |
ccaccttgttcgtggcggggaagtatgtttcgaattgttttggagcgggttagagcttggtggatctctgcggaagcaccgccagggtaagcgaagacgg |
9934267 |
T |
|
| Q |
123 |
tggtaacgccttcgcgttctaaggcttcaacgagaatgtcggagccttttcggggttgggaggaggagaaacgagaggtgaaaggctca |
211 |
Q |
| |
|
|||| | ||||| || || | |||||||||||||| |||||||||||||| |||| | |||||||||| |||| |||||| |||| |
|
|
| T |
9934266 |
tggttatgccttgacgctcaagtgcttcaacgagaatatcggagccttttcgaggttcagttgaggagaaacaagagttgaaagcctca |
9934178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 3471808 - 3471637
Alignment:
| Q |
8 |
tcggcggcgaagacaccaccttgttcatgacgggggagtatgttacggatggttttggaacgagtgagagcttggtggatctccatggaagcgccgccag |
107 |
Q |
| |
|
||||| ||||||| ||||||||||| ||||| ||||| | |||||| |||| |||| || ||||| ||||| || |||||||| ||||||||||| | |
|
|
| T |
3471808 |
tcggcagcgaagattccaccttgttcgtgacgagggaggacgttacgaatggcggtggagcgcgtgagtgcttgatgaatctccattgaagcgccgccgg |
3471709 |
T |
|
| Q |
108 |
ggtaagcgaagacgttggtaacgccttcgcgttctaaggcttcaacgagaatgtcggagccttttcggggtt |
179 |
Q |
| |
|
||||||||||||| || ||||| || | ||||| | | ||| ||||| ||||||| ||||||||| |||| |
|
|
| T |
3471708 |
ggtaagcgaagacatttgtaactccctgacgttcgagtgattcgacgaggatgtcggcgccttttcgaggtt |
3471637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University