View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19947_high_4 (Length: 511)
Name: NF19947_high_4
Description: NF19947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19947_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 32671425 - 32671920
Alignment:
| Q |
1 |
ttttgcttagattgtttaataaacgtcgctcacactcccctatccaatgaggtgccttttagaaaggataaaccgtgagagctttacatacaagacttaa |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32671425 |
ttttgcttagactgtttaataaacgtcgctcacactcccctatccaatgaggtgccttttagaaaggataaaccgtgagagctttacatacaagacctaa |
32671524 |
T |
|
| Q |
101 |
agtcgacaattaatatcacgaaaatgtggtgtcgtgcactcgaagacgaagttggtgaaggtcaaaatagtgtagtagttaaatatcaaagattatttga |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32671525 |
agccgacaattaatatcacgaaaatgtggtgtcgtgcactcgaagacgaagttggtgaaggtcaaaatagtgtagtagttaaatatcaaagattatttga |
32671624 |
T |
|
| Q |
201 |
ttcttgtatgatgattgttctgttccattgttcttcaattgggtcacttactttgttttgtttggcattagtcgcatttgaagtagcagtcaagaaactt |
300 |
Q |
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| T |
32671625 |
ttcttgtatgatgattgttctgtttcattgttcttcaattgggtcacttactttgttttgtttggcattagtcgcatttgaagtagcagtaaagaaactt |
32671724 |
T |
|
| Q |
301 |
tgtaactatgactttatgatgcaatcaaaattcttttttatgtgtttcatgctgatataacgtgctatcacattatgtatgcatgatcttattctttaca |
400 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32671725 |
tgtaactatgactttatgatgcaatcaacattcttttttaagtgtttcatgctgatataacgtgctatcacattatgtatgcatgatcttattctttaca |
32671824 |
T |
|
| Q |
401 |
aactaagaatttaagaagggtagccaaactttgacactttttggctaactttggaacatgatcatgtgtccaaagtccaaagacatgacttatatc |
496 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32671825 |
aactaggaatttaagaagggtagccaaactttgacactttttggctaactttggaacatgatcatgtgtccaaagtccaaagacatgacttatatc |
32671920 |
T |
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