View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19947_high_6 (Length: 501)

Name: NF19947_high_6
Description: NF19947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19947_high_6
NF19947_high_6
[»] chr2 (3 HSPs)
chr2 (58-483)||(30404365-30404790)
chr2 (82-312)||(30395773-30396003)
chr2 (185-236)||(8378958-8379009)
[»] chr8 (4 HSPs)
chr8 (187-470)||(15844371-15844654)
chr8 (187-470)||(15858506-15858789)
chr8 (187-482)||(15865574-15865869)
chr8 (187-313)||(15851606-15851732)
[»] chr5 (1 HSPs)
chr5 (185-312)||(41626807-41626934)
[»] chr4 (1 HSPs)
chr4 (193-334)||(11019436-11019577)


Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 58 - 483
Target Start/End: Complemental strand, 30404790 - 30404365
Alignment:
Q  58 gcacactataatttgtggaaaatgatatgagccccatgttttggattaagagtgaatacagttgttggagcatgaacatagttaggggaaagttcaaatg 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30404790 gcacactataatttgtggaaaatgatatgagccccatgttttggattaagagtgaatacagttgttggagcatgaacatagttaggggaaagttcaaatg 30404691  T
Q  158 agaaacgttgtagaagttgtgacaaaaccatctttgcttctaataaagcaaagttttgccccatgcaaactctaggaccataaccaaatgggaaaaaaca 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30404690 agaaacgttgtagaagttgtgacaaaaccatctttgcttctaataaagcaaagttttgccccatgcaaactctaggaccataaccaaatgggaaaaaaca 30404591  T
Q  258 aacttggccttttgttgcttttgcaattccttccgaaaatctctctggattgaactcagtggcatcatctccccaaatatcgcgattgtggtgaattaag 357  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30404590 aacttggccttttgttgcttttgcgattccttccgaaaatctctctggattgaactcagtggcatcatctccccaaatatcgcgattgtggtgaattaag 30404491  T
Q  358 agtattggtaaggaaacatgtactcctgcggggaggaaaagacttccaactttcacatctttgcgagctactcgattgaagtaaattaccggtgggtata 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30404490 agtattggtaaggaaacatgtactcctgcggggaggaaaagacttccaactttcacatctttgcgagctactcgattgaagtaaattaccggtgggtata 30404391  T
Q  458 accttagtacctcatagagaatcatt 483  Q
    ||||||||||||||||||||||||||    
T  30404390 accttagtacctcatagagaatcatt 30404365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 312
Target Start/End: Complemental strand, 30396003 - 30395773
Alignment:
Q  82 atatgagccccatgttttggattaagagtgaatacagttgttggagcatgaacatagttaggggaaagttcaaatgagaaacgttgtagaagttgtgaca 181  Q
    |||||||| |||| || ||| | |||||| |  ||||||| |||||||||| ||||| | | ||||||||||||||| ||| |||| | ||    |||||    
T  30396003 atatgagcaccatattgtggctgaagagtaatcacagttgatggagcatgagcataggttgaggaaagttcaaatgaaaaatgttgcaaaatcattgaca 30395904  T
Q  182 aaaccatctttgcttctaataaagcaaagttttgccccatgcaaactctaggaccataaccaaatgggaaaaaacaaacttggccttttgttgcttttgc 281  Q
    |  ||||||||||||| | ||  | ||||||||| || ||||||| ||| |||||  | |||||||| |||||  |||||   || ||||||||||| |     
T  30395903 atgccatctttgcttccattagggaaaagttttgtccaatgcaaattcttggaccccatccaaatggaaaaaatgaaactctaccatttgttgctttaga 30395804  T
Q  282 aattccttccgaaaatctctctggattgaac 312  Q
    ||||||| | ||||||||||| |||||||||    
T  30395803 aattcctccggaaaatctctcaggattgaac 30395773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 8378958 - 8379009
Alignment:
Q  185 ccatctttgcttctaataaagcaaagttttgccccatgcaaactctaggacc 236  Q
    ||||||||||||| ||||  | ||||||||| ||||||||||||||||||||    
T  8378958 ccatctttgcttccaatagggaaaagttttgtcccatgcaaactctaggacc 8379009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 187 - 470
Target Start/End: Original strand, 15844371 - 15844654
Alignment:
Q  187 atctttgcttctaataaagcaaagttttgccccatgcaaactctaggaccataaccaaatgggaaaaaacaaacttggccttttgttgcttttgcaattc 286  Q
    ||||||||||||||||| | ||||||||| || |  |||| |||||||||  | ||||| |||||| || ||||||| ||||||||||| || |||||||    
T  15844371 atctttgcttctaataaggtaaagttttgtccaagacaaattctaggaccccatccaaaggggaaataagaaacttgtccttttgttgccttcgcaattc 15844470  T
Q  287 cttccgaaaatctctctggattgaactcagtggcatcatctccccaaatatcgcgattgtggtgaattaagagtattggtaaggaaacatgtactcctgc 386  Q
    |||| | ||| || || || ||||||||  | |||||||| ||||| | |||  |||  |||||||| || | |||||||| || ||||| |  |||||     
T  15844471 cttcagcaaacctttcgggtttgaactcctttgcatcatccccccatagatcttgatcatggtgaatcaatactattggtagggcaacatttgttcctgt 15844570  T
Q  387 ggggaggaaaagacttccaactttcacatctttgcgagctactcgattgaagtaaattaccggtgggtataaccttagtacctc 470  Q
    ||| || |||||  |||||| ||||| ||| ||  || |  ||||||||||||||||||| || ||||||||||||||||||||    
T  15844571 gggcagcaaaagttttccaagtttcaaatccttttgaacagctcgattgaagtaaattacaggagggtataaccttagtacctc 15844654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 187 - 470
Target Start/End: Original strand, 15858506 - 15858789
Alignment:
Q  187 atctttgcttctaataaagcaaagttttgccccatgcaaactctaggaccataaccaaatgggaaaaaacaaacttggccttttgttgcttttgcaattc 286  Q
    ||||||||||||||||| ||||||||||| || |  |||| |||||||||  | ||||| |||||| || ||||||| ||||||||||| || |||||||    
T  15858506 atctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggaaataagaaacttgtccttttgttgccttcgcaattc 15858605  T
Q  287 cttccgaaaatctctctggattgaactcagtggcatcatctccccaaatatcgcgattgtggtgaattaagagtattggtaaggaaacatgtactcctgc 386  Q
    |||| | ||| || || || ||||||||  | |||||||| ||||| | |||  |||  |||||||| || |||||||||| |||||  |||  |||| |    
T  15858606 cttcagcaaacctttcaggtttgaactcctttgcatcatcaccccatagatcatgatcttggtgaatcaatagtattggtagggaaatttgtgttccttc 15858705  T
Q  387 ggggaggaaaagacttccaactttcacatctttgcgagctactcgattgaagtaaattaccggtgggtataaccttagtacctc 470  Q
     || || |||||  |||||| ||||| ||| || |||    |||| |||||||||||||  |||||| ||||||||||||||||    
T  15858706 aggtagcaaaaggtttccaagtttcaaatcctttcgaagagctcggttgaagtaaattaaaggtgggaataaccttagtacctc 15858789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 482
Target Start/End: Original strand, 15865574 - 15865869
Alignment:
Q  187 atctttgcttctaataaagcaaagttttgccccatgcaaactctaggaccataaccaaatgggaaaaaacaaacttggccttttgttgcttttgcaattc 286  Q
    ||||||||||||| ||| ||||||||||| || |  |||| |||||||||  | ||||| |||||| || ||||||  |||||||| || ||||||||||    
T  15865574 atctttgcttctagtaaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggaaataagaaacttttccttttgtagcctttgcaattc 15865673  T
Q  287 cttccgaaaatctctctggattgaactcagtggcatcatctccccaaatatcgcgattgtggtgaattaagagtattggtaaggaaacatgtactcctgc 386  Q
    |||| | ||| || || || ||||||||  | |||||||| ||||| | |||  |||  |||||||| || |||||||||| |||||  |||  |||| |    
T  15865674 cttcagcaaacctttcaggtttgaactcctttgcatcatcaccccatagatcatgatcttggtgaatcaatagtattggtagggaaatttgtgttccttc 15865773  T
Q  387 ggggaggaaaagacttccaactttcacatctttgcgagctactcgattgaagtaaattaccggtgggtataaccttagtacctcatagagaatcat 482  Q
     || ||  |||   |||||| ||||| ||| || |||    |||| |||||||||||||  |||||| ||||||||||||||||||| | ||||||    
T  15865774 aggtagcgaaacgtttccaagtttcaaatcctttcgaagagctcggttgaagtaaattaaaggtgggaataaccttagtacctcatacaaaatcat 15865869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 313
Target Start/End: Original strand, 15851606 - 15851732
Alignment:
Q  187 atctttgcttctaataaagcaaagttttgccccatgcaaactctaggaccataaccaaatgggaaaaaacaaacttggccttttgttgcttttgcaattc 286  Q
    ||||||||||||||||| ||||||||||| || |  |||| |||||||||  | ||||| |||| | |  |||||||||||||||| || ||||||||||    
T  15851606 atctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgtggcctttgcaattc 15851705  T
Q  287 cttccgaaaatctctctggattgaact 313  Q
    |||| ||||| |  || ||||||||||    
T  15851706 cttcagaaaaccgttcaggattgaact 15851732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 312
Target Start/End: Original strand, 41626807 - 41626934
Alignment:
Q  185 ccatctttgcttctaataaagcaaagttttgccccatgcaaactctaggaccataaccaaatgggaaaaaacaaacttggccttttgttgcttttgcaat 284  Q
    ||||||||||||| |||| || |||||||||||| ||||| |  ||||||||  | |||||||| |||||  |||||   || || |||||||| | |||    
T  41626807 ccatctttgcttccaatagagaaaagttttgcccaatgcagatcctaggaccccatccaaatggaaaaaatgaaactctaccgttcgttgctttggaaat 41626906  T
Q  285 tccttccgaaaatctctctggattgaac 312  Q
    |||| | |||||||| || |||||||||    
T  41626907 tcctccagaaaatctttcaggattgaac 41626934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 334
Target Start/End: Complemental strand, 11019577 - 11019436
Alignment:
Q  193 gcttctaataaagcaaagttttgccccatgcaaactctaggaccataaccaaatgggaaaaaacaaacttggccttttgttgcttttgcaattccttccg 292  Q
    |||||||||||| |||||||||| || || |||| ||| |||||  | ||||| || ||  || |||||| ||| |||||||| |||| || |||||| |    
T  11019577 gcttctaataaaccaaagttttgtccaatacaaagtcttggaccccatccaaaaggcaagtaagaaactttgccatttgttgcctttgaaactccttcag 11019478  T
Q  293 aaaatctctctggattgaactcagtggcatcatctccccaaa 334  Q
    | ||||| ||||| ||||| ||    ||||||||||||||||    
T  11019477 agaatctttctggtttgaaatctccagcatcatctccccaaa 11019436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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