View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19947_high_7 (Length: 474)
Name: NF19947_high_7
Description: NF19947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19947_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 457
Target Start/End: Complemental strand, 42071103 - 42070662
Alignment:
| Q |
17 |
ttcaatcatagatgcacttgagtgtgaattgtcaaacccacttaaacccatacttaaataatccaaatttaatcaaacttaaaccgatgtaatgttggtt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42071103 |
ttcaatcatagatgcacttgagtgtgaattgtcaaacccacttaaacccctacttaaataatccaaatttaatcaaacttaaaccgatgtaatgttggtt |
42071004 |
T |
|
| Q |
117 |
aaactatgannnnnnnnnnnnnn-accaaaagttaaactatggnnnnnnnggttgttgaaataactatgaatttgattacactaattttgattgatttta |
215 |
Q |
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| T |
42071003 |
aaactatgatttttttttatttttaccaaaagttaaactatggtttttttggttgttgaaataactatgaatttgattacactaattttgattgatttta |
42070904 |
T |
|
| Q |
216 |
tcacacgtaaagtaatagtttacgtgctatggttgaactataataactagggatttgaactccacagcacaagtgtacattaatcggtgtgaagccattt |
315 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42070903 |
tcacacgaaaagtaataatttacgtgctatggttgaactataataactagggatttgaactccacagcacaagtgtacattaatcggtgtgaagccattt |
42070804 |
T |
|
| Q |
316 |
taccaaaatgcccacgtatgtggatatattatgagaagcaaaattaggtagttaatttgctttgtaagcaatatataggaagtttcccaatgtccccatg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42070803 |
taccaaaatgcccacgtatgtggatatattatgagaagcaaaattaggtagttaatttgctttgtaagcaatatataggaagtttcccaatgtccccatg |
42070704 |
T |
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| Q |
416 |
taaggttgagagtactaaattcagcttttaattgaggatcat |
457 |
Q |
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| T |
42070703 |
taaggttgagagtactaaattcagcttttaattgaggatcat |
42070662 |
T |
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